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MK942064.1__QCW21975.1__JessAGP_045c__00045
Bact-VirMK942064.1__QCW21975.1__JessAGP_045c__00045
Identity
- Accession:
- MK942064 ↗
- Kingdom:
- phage
Quality
61.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-59
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4v19I01 | 3.40.5.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain | 0.70 | 49.0 | 4.82e-01 | 75.0% | 68.4% |
| 5cr9A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 39.0 | 3.17e-01 | 90.4% | 72.5% |
| 2d4aA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 38.0 | 2.70e-01 | 80.8% | 97.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3703797 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.73 | 54.0 | 5.34e-01 | 78.8% | 81.8% |
| 3705471 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.73 | 54.0 | 5.30e-01 | 78.8% | 81.8% |
| 3266009 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.73 | 55.0 | 5.40e-01 | 80.8% | 78.2% |
| 3606398 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.72 | 55.0 | 5.39e-01 | 80.8% | 76.4% |
| 3705484 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.71 | 52.0 | 5.14e-01 | 78.8% | 76.4% |
| 5010674 | 4076.3.1.11 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PF25865 | 0.69 | 50.0 | 4.92e-01 | 76.9% | 76.4% |
| 3600188 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.68 | 50.0 | 4.93e-01 | 78.8% | 76.4% |
| 4068274 | 4076.1.1.1 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N | 0.68 | 48.0 | 4.76e-01 | 75.0% | 70.9% |
| 4158800 | 4076.1.1.1 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N | 0.67 | 47.0 | 4.68e-01 | 75.0% | 70.9% |
| 3902139 | 4.1.1.99 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_10 | 0.67 | 48.0 | 4.38e-01 | 76.9% | 77.1% |
| 3640007 | 109.4.1.1313 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, IBN_N, HEAT_EZ, TPR_IMB1, TPR_IPO5 | 0.65 | 51.0 | 2.78e-01 | 88.5% | 11.9% |
| 3889037 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.55 | 41.0 | 2.79e-01 | 84.6% | 33.2% |
| 4456734 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.53 | 37.0 | 3.48e-01 | 75.0% | 64.3% |
| 3966244 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.52 | 43.0 | 3.52e-01 | 100.0% | 48.2% |
| 5014012 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.51 | 41.0 | 2.76e-01 | 92.3% | 46.7% |
| 4252883 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.51 | 39.0 | 3.24e-01 | 100.0% | 43.6% |
| 4200413 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.51 | 42.0 | 3.48e-01 | 100.0% | 49.5% |