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MK962758.1__QEG06664.1__JK55_00002__00002

Bact-Vir

MK962758.1__QEG06664.1__JK55_00002__00002

Identity

Accession:
MK962758 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-163
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7b7tA03 3.40.50.2030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 49.0 4.06e-01 89.0% 91.8%
2z3vA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 40.0 3.89e-01 70.3% 81.0%
1hkvA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.59 42.0 3.29e-01 75.4% 95.8%
5hwoA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 42.0 2.90e-01 74.6% 95.2%
1y6zA02 3.40.50.11260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 39.0 4.42e-01 96.6% 96.5%
2fqqA01 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 39.0 3.80e-01 70.3% 94.0%
1tedB01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 37.0 3.07e-01 70.3% 36.7%
1gq2A01 3.40.50.10380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain 0.56 47.0 3.74e-01 93.2% 89.0%
1agyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 45.0 3.85e-01 88.1% 89.3%
2b3yA02 3.40.1060.10 Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 0.55 38.0 3.76e-01 71.2% 100.0%
2lnaA00 3.40.1690.20 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › 0.54 39.0 4.20e-01 93.2% 90.9%
6lkzC01 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 38.0 2.74e-01 73.7% 38.1%
3sxuB00 3.40.50.10220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DNA polymerase III, psi subunit 0.53 36.0 3.79e-01 76.3% 78.4%
3bblA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 37.0 3.56e-01 72.9% 79.0%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 41.0 3.08e-01 85.6% 81.4%
1o0sA03 3.40.50.10380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain 0.51 43.0 3.57e-01 94.9% 67.9%
4gu5B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 35.0 3.34e-01 70.3% 98.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3364578 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.68 47.0 3.97e-01 70.3% 93.8%
4973853 7586.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in prismane-like proteins › Rossmann-like domain in prismane-like proteins › Rossmann-like domain in prismane-like proteins 0.59 48.0 3.85e-01 89.8% 85.9%
3397280 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.59 42.0 3.40e-01 74.6% 73.3%
3185916 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.59 43.0 3.73e-01 78.0% 85.3%
4882882 4044.1.1.1 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.58 46.0 3.79e-01 87.3% 91.3%
3800924 2007.1.6.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain 0.55 46.0 3.61e-01 92.4% 84.4%
4029173 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.55 45.0 3.24e-01 90.7% 96.3%
4947377 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.54 39.0 3.05e-01 75.4% 92.8%
4979410 7569.1.1.0 a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like 0.53 41.0 3.75e-01 81.4% 74.2%
4429414 3255.1.1.1 a/b three-layered sandwiches › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › FHIPEP 0.53 37.0 3.94e-01 72.9% 100.0%
4177481 2004.1.1.51 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.53 42.0 3.11e-01 84.7% 68.9%
3738618 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 37.0 2.85e-01 74.6% 83.8%
4020714 7575.1.1.9 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › CHAT 0.51 36.0 2.83e-01 72.0% 60.8%
2390096 7523.1.1.4 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.50 35.0 3.34e-01 72.0% 67.4%
D2 high residues 173-262
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5j9bA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 49.0 4.06e-01 87.8% 74.2%
6k34A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 53.0 3.63e-01 100.0% 82.7%
3aimA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 53.0 3.66e-01 100.0% 88.0%
5jd5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 51.0 3.46e-01 100.0% 78.2%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 48.0 3.31e-01 100.0% 87.4%
1f8uA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 48.0 2.98e-01 100.0% 87.2%
4jxkA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.53 43.0 3.62e-01 90.0% 67.3%
4m9rB00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.20e-01 87.8% 94.6%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 35.0 3.13e-01 97.8% 45.7%
6scjA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 46.0 2.88e-01 100.0% 87.6%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 41.0 3.48e-01 87.8% 67.1%
1l7qA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 46.0 3.36e-01 100.0% 84.3%
3h2gA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 3.23e-01 100.0% 95.0%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 41.0 3.38e-01 87.8% 59.9%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.10e-01 100.0% 80.4%
4ogcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 37.0 2.86e-01 75.6% 66.8%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3729759 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.64 52.0 3.43e-01 87.8% 87.1%
4538867 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.63 53.0 3.38e-01 90.0% 70.5%
1886991 2485.1.1.31 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Redoxin 0.61 49.0 4.08e-01 87.8% 75.2%
3351287 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.61 53.0 3.66e-01 94.4% 90.2%
4329054 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.61 52.0 3.51e-01 94.4% 82.0%
None 0.60 52.0 3.38e-01 94.4% 82.0%
3748117 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.60 52.0 3.36e-01 94.4% 82.5%
3461844 7579.1.1.101 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, Abhydrolase_3, BD-FAE 0.60 52.0 3.49e-01 95.6% 83.1%
3735392 2007.1.1.32 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HET 0.60 52.0 4.04e-01 98.9% 80.3%
3343489 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.60 51.0 3.54e-01 94.4% 91.8%
3726614 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.59 51.0 3.32e-01 97.8% 38.1%
3546240 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.59 52.0 3.34e-01 95.6% 81.4%
3684415 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.59 48.0 3.55e-01 88.9% 64.2%
3726852 2004.1.1.685 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HET 0.59 50.0 3.71e-01 97.8% 65.2%
4023005 7512.1.1.58 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › HET 0.58 51.0 3.92e-01 98.9% 81.8%
3327653 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.58 50.0 3.44e-01 93.3% 88.8%
None 0.58 53.0 3.58e-01 100.0% 80.1%
None 0.58 53.0 3.54e-01 100.0% 80.2%
3728882 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.57 52.0 3.49e-01 100.0% 86.2%
3724886 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.57 52.0 3.52e-01 100.0% 87.9%
3645142 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.57 52.0 3.52e-01 100.0% 85.4%
None 0.57 48.0 2.81e-01 92.2% 95.4%
4295826 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.57 52.0 3.55e-01 100.0% 82.3%
2899809 7579.1.1.94 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Peptidase_S15 0.56 45.0 3.17e-01 88.9% 88.1%
3926860 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.56 50.0 3.28e-01 100.0% 82.1%
5035217 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.56 50.0 3.42e-01 100.0% 89.1%
3501951 236.1.1.1 beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.56 45.0 3.80e-01 88.9% 70.1%
4020035 236.1.1.0 beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.55 45.0 3.49e-01 91.1% 82.3%
3179864 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.55 49.0 3.20e-01 100.0% 75.4%
3957145 7579.1.1.9 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase 0.55 43.0 3.30e-01 84.4% 91.6%
3399103 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.55 45.0 3.19e-01 91.1% 93.6%
4341236 7579.1.1.94 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Peptidase_S15 0.55 48.0 3.30e-01 100.0% 85.7%
5062940 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 48.0 3.52e-01 98.9% 97.9%
4896632 7579.1.1.171 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › UPF0227, Hydrolase_4 0.54 46.0 3.41e-01 94.4% 78.2%
224835 236.1.1.1 beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.53 43.0 4.05e-01 90.0% 94.8%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.53 31.0 3.74e-01 82.2% 89.7%
None 0.53 47.0 3.23e-01 100.0% 78.8%
4026389 3662.1.1.3 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC4 0.52 40.0 3.76e-01 98.9% 66.4%
3575441 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.52 46.0 3.23e-01 100.0% 87.0%
3240543 7579.1.1.89 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.52 45.0 2.84e-01 100.0% 85.8%
D3 high residues 265-408
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 35.0 3.82e-01 86.1% 69.2%
3w3aG00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 30.0 2.70e-01 88.9% 36.7%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.50 30.0 3.23e-01 84.0% 69.4%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 35.0 3.62e-01 88.9% 75.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3722750 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 38.0 3.00e-01 71.5% 87.2%
3893725 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 37.0 2.61e-01 72.2% 36.0%
4958743 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 36.0 3.98e-01 88.9% 87.8%
4958744 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 37.0 4.16e-01 100.0% 97.3%