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MK967378.1__QDM55955.1__SEA_TRAX_68__00068
Bact-VirMK967378.1__QDM55955.1__SEA_TRAX_68__00068
Identity
- Accession:
- MK967378 ↗
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Taxonomy
TaxID: 2591121
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-73
Domain cluster:
rep: NC_011039.1__YP_002003432.1__PREDATR_74__00074__D13-101
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 46.0 | 5.08e-01 | 98.5% | 98.0% |
| 3f8uB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 54.0 | 4.51e-01 | 95.5% | 91.1% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.63 | 42.0 | 4.23e-01 | 85.1% | 68.2% |
| 1x3zA04 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 45.0 | 4.91e-01 | 82.1% | 98.1% |
| 4ld6A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 48.0 | 4.11e-01 | 100.0% | 51.3% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 49.0 | 4.27e-01 | 100.0% | 57.4% |
| 1u04A02 | 3.90.70.180 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.60 | 50.0 | 4.28e-01 | 95.5% | 84.8% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 43.0 | 3.56e-01 | 79.1% | 66.7% |
| 3i87A02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.58 | 42.0 | 3.77e-01 | 77.6% | 92.9% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 49.0 | 3.98e-01 | 100.0% | 75.0% |
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 36.0 | 3.87e-01 | 89.6% | 75.4% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 43.0 | 4.47e-01 | 100.0% | 88.9% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 45.0 | 4.43e-01 | 100.0% | 86.1% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 35.0 | 4.03e-01 | 77.6% | 95.6% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 4.24e-01 | 100.0% | 84.1% |
| 4agrB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 38.0 | 3.02e-01 | 74.6% | 92.4% |
| 2i06A01 | 3.50.14.10 | Alpha Beta › 3-Layer(bba) Sandwich › Replication Terminator Protein (Tus); Chain A, domain 1 › Replication terminator Tus, domain 1 superfamily/Replication terminator Tus | 0.54 | 47.0 | 3.31e-01 | 97.0% | 81.8% |
| 3fe4B00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.54 | 44.0 | 3.08e-01 | 94.0% | 47.8% |
| 2zgiA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.53 | 36.0 | 3.18e-01 | 70.1% | 77.8% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.53 | 38.0 | 3.99e-01 | 92.5% | 92.9% |
| 6phxA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.52 | 42.0 | 2.86e-01 | 95.5% | 56.2% |
| 7bsbI01 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.52 | 42.0 | 3.40e-01 | 88.1% | 94.5% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.50 | 38.0 | 3.40e-01 | 85.1% | 89.3% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3591870 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 58.0 | 4.64e-01 | 97.0% | 95.4% |
| 3641051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 55.0 | 4.96e-01 | 100.0% | 85.3% |
| 3738927 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.63 | 54.0 | 4.50e-01 | 100.0% | 73.6% |
| 3471779 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 50.0 | 3.08e-01 | 92.5% | 22.1% |
| 3268766 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.61 | 49.0 | 3.92e-01 | 91.0% | 71.7% |
| 3606350 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.60 | 43.0 | 4.04e-01 | 76.1% | 91.7% |
| 3390533 | 4.8.1.19 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › WAC_Acf1_DNA_bd | 0.60 | 52.0 | 3.98e-01 | 100.0% | 43.8% |
| 5054847 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.59 | 48.0 | 4.01e-01 | 91.0% | 90.0% |
| 3703449 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.59 | 50.0 | 4.87e-01 | 100.0% | 94.7% |
| 3593970 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 47.0 | 3.41e-01 | 91.0% | 30.3% |
| 3915829 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 44.0 | 3.36e-01 | 82.1% | 38.2% |
| 3217379 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.58 | 46.0 | 4.15e-01 | 89.6% | 87.4% |
| 3175156 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 50.0 | 4.97e-01 | 100.0% | 95.7% |
| 3463266 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.57 | 40.0 | 4.20e-01 | 76.1% | 83.3% |
| 3454238 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.55 | 45.0 | 4.26e-01 | 94.0% | 89.4% |
| 3720521 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.55 | 42.0 | 3.84e-01 | 86.6% | 61.1% |
| 3701675 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 39.0 | 3.89e-01 | 74.6% | 83.8% |
| 3817655 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.55 | 47.0 | 3.90e-01 | 100.0% | 61.6% |
| 4311607 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.55 | 42.0 | 3.44e-01 | 88.1% | 55.0% |
| 3205743 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.55 | 39.0 | 3.24e-01 | 76.1% | 49.2% |
| 3688824 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.55 | 43.0 | 3.87e-01 | 88.1% | 62.1% |
| 3420926 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 44.0 | 2.81e-01 | 92.5% | 26.6% |
| 3606396 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 46.0 | 2.99e-01 | 100.0% | 37.6% |
| 3865654 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.54 | 45.0 | 3.79e-01 | 94.0% | 67.5% |
| 3418216 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.54 | 41.0 | 4.26e-01 | 83.6% | 96.7% |
| 4535258 | 220.5.1.1 ↗ | beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N | 0.53 | 46.0 | 3.99e-01 | 100.0% | 91.8% |
| 4965032 | 375.1.1.343 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 | 0.53 | 40.0 | 4.31e-01 | 86.6% | 100.0% |
| 5057515 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.53 | 40.0 | 4.23e-01 | 97.0% | 95.0% |
| 3250190 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.53 | 41.0 | 2.61e-01 | 92.5% | 40.2% |
| 4600226 | 5.1.4.307 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 | 0.53 | 46.0 | 2.81e-01 | 100.0% | 94.8% |
| 5024527 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.52 | 36.0 | 3.30e-01 | 73.1% | 96.8% |
| 3309307 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 46.0 | 2.64e-01 | 100.0% | 54.2% |
| 3460645 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.52 | 44.0 | 2.73e-01 | 94.0% | 28.2% |
| 3995314 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 43.0 | 3.51e-01 | 97.0% | 62.2% |
| 2556671 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.52 | 35.0 | 3.67e-01 | 73.1% | 80.3% |
| 3781495 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 40.0 | 2.45e-01 | 91.0% | 32.8% |
| 5053714 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 36.0 | 2.98e-01 | 76.1% | 95.6% |
| 3499266 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 38.0 | 3.20e-01 | 82.1% | 73.2% |
| 3771653 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.50 | 37.0 | 3.33e-01 | 83.6% | 59.0% |
| 3847237 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.50 | 39.0 | 3.35e-01 | 83.6% | 86.7% |
| 5055065 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.54e-01 | 77.6% | 90.7% |