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MK967380.1__QDM56030.1__SEA_SLEEPYHEAD_15__00014

Bact-Vir

MK967380.1__QDM56030.1__SEA_SLEEPYHEAD_15__00014

Identity

Accession:
MK967380 ↗
Kingdom:
phage

Quality

66.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sleepyheadvirus› Rhodococcus_phage_Sleepyhead

TaxID: 2591131

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-113
PDB
Domain cluster: rep: NC_048028.1__YP_009807745.1__HOT82_gp049__00049__D15-92
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.66 21.0 2.72e-01 98.0% 41.9%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.60 26.0 3.63e-01 78.2% 87.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 4.24e-01 96.0% 95.6%
1c3gA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.56 34.0 3.83e-01 99.0% 78.2%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.54 32.0 3.27e-01 87.1% 59.8%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.53 28.0 3.23e-01 100.0% 69.3%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 35.0 3.51e-01 94.1% 65.7%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 33.0 3.24e-01 97.0% 57.3%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.51 30.0 3.23e-01 77.2% 65.9%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 34.0 3.03e-01 100.0% 47.5%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 38.0 2.99e-01 79.2% 65.5%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 44.0 3.24e-01 97.0% 91.2%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 32.0 3.38e-01 99.0% 71.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3487368 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.65 40.0 4.70e-01 99.0% 95.4%
3727442 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.63 31.0 2.92e-01 85.1% 38.4%
5010647 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.62 45.0 3.48e-01 75.2% 50.2%
3351840 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.59 38.0 4.41e-01 100.0% 95.7%
4324528 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.58 37.0 4.11e-01 100.0% 85.3%
3914423 2007.2.4.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase › PF27561 0.58 51.0 3.35e-01 100.0% 94.5%
3394227 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 39.0 2.84e-01 75.2% 49.0%
D2 high residues 122-181
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d3yA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.73 43.0 2.82e-01 80.0% 15.3%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.69 48.0 4.13e-01 75.0% 46.9%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 46.0 3.61e-01 85.0% 36.4%
7fsfA02 3.30.56.80 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.60 50.0 4.79e-01 93.3% 98.6%
1b43A02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 43.0 4.32e-01 85.0% 100.0%
4cvuA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 47.0 2.92e-01 100.0% 29.7%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.82e-01 91.7% 74.4%
3hdiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 41.0 3.05e-01 98.3% 83.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3498360 185.1.3.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › GDNF receptor › GDNF 0.67 51.0 4.32e-01 83.3% 85.0%
4110761 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.57 43.0 3.46e-01 83.3% 65.0%
5001205 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.54 44.0 3.26e-01 100.0% 85.5%
4448094 367.1.1.1 ↗ few secondary structure elements › Insulin-like › Insulin-like › Insulin-like › Insulin 0.53 38.0 3.71e-01 75.0% 92.6%