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MK967393.1__QDM57094.1__SEA_WHACK_31__00031

Bact-Vir

MK967393.1__QDM57094.1__SEA_WHACK_31__00031

Identity

Accession:
MK967393 ↗
Kingdom:
phage

Quality

66.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-64
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.75 68.0 5.46e-01 100.0% 72.8%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 48.0 4.79e-01 70.5% 66.1%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.72 63.0 4.57e-01 100.0% 46.6%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 52.0 5.69e-01 86.9% 100.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 46.0 4.55e-01 70.5% 63.5%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 51.0 5.28e-01 82.0% 84.2%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 62.0 4.84e-01 100.0% 55.7%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.70 56.0 3.38e-01 100.0% 12.8%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.69 60.0 5.70e-01 100.0% 84.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 42.0 4.09e-01 70.5% 56.1%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 61.0 5.03e-01 100.0% 65.1%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.68 60.0 5.27e-01 100.0% 70.7%
4ic6C01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 58.0 4.89e-01 100.0% 68.2%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 55.0 5.14e-01 100.0% 73.3%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.67 60.0 4.26e-01 100.0% 39.7%
4ohvA03 2.40.30.330 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain 0.66 51.0 4.47e-01 82.0% 78.7%
3cr8A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.66 56.0 4.40e-01 100.0% 70.9%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.65 46.0 3.56e-01 75.4% 87.7%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 57.0 5.08e-01 100.0% 75.9%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.64 57.0 4.98e-01 100.0% 76.9%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 56.0 5.01e-01 100.0% 76.5%
4rqyA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 55.0 4.44e-01 100.0% 56.1%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 55.0 4.90e-01 100.0% 71.9%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 54.0 4.79e-01 100.0% 72.8%
5y2dA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 54.0 4.41e-01 100.0% 51.7%
1iq8A04 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.62 55.0 5.10e-01 100.0% 88.5%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.62 53.0 5.14e-01 100.0% 91.3%
1l1jA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 54.0 4.40e-01 100.0% 74.6%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 53.0 4.61e-01 100.0% 67.7%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 52.0 4.22e-01 100.0% 69.0%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 53.0 4.51e-01 100.0% 65.1%
2o8mB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 47.0 4.59e-01 100.0% 77.3%
6k2lA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 52.0 4.36e-01 100.0% 70.3%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 52.0 4.33e-01 100.0% 67.9%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 54.0 4.63e-01 100.0% 77.3%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 50.0 4.71e-01 100.0% 75.9%
8gz3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 51.0 4.52e-01 100.0% 71.0%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 51.0 4.61e-01 100.0% 73.6%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 44.0 3.78e-01 88.5% 82.1%
4dmgA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 49.0 4.72e-01 100.0% 84.7%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 43.0 3.41e-01 85.2% 52.2%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.56 44.0 3.85e-01 96.7% 61.3%
2ahoB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 51.0 4.60e-01 100.0% 96.2%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.56 45.0 4.51e-01 100.0% 92.4%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 44.0 4.07e-01 91.8% 95.1%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 44.0 4.09e-01 100.0% 87.5%
3syjA02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 42.0 2.46e-01 91.8% 16.8%
2khjA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 47.0 4.12e-01 98.4% 89.9%
3h09A04 4.10.1240.40 Few Secondary Structures › Irregular › Hormone receptor fold › 0.53 41.0 3.96e-01 91.8% 97.2%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.56e-01 95.1% 51.7%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 36.0 3.04e-01 100.0% 39.5%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.53e-01 96.7% 49.6%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 42.0 3.65e-01 100.0% 65.1%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.87e-01 100.0% 81.6%
1maeL00 2.60.30.10 Mainly Beta › Sandwich › Electron Transport Ethylamine Dehydrogenase › Methylamine/Aralkylamine dehydrogenase light chain 0.51 43.0 3.50e-01 100.0% 91.9%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603182 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 61.0 5.57e-01 83.6% 66.3%
4123274 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.77 58.0 6.06e-01 82.0% 89.1%
4950268 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.75 56.0 5.66e-01 82.0% 81.7%
5034906 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.74 61.0 4.52e-01 90.2% 73.2%
3676844 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 51.0 4.78e-01 100.0% 61.3%
5017260 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.71 62.0 4.84e-01 100.0% 94.8%
3945543 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 62.0 5.59e-01 100.0% 87.1%
3922903 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.70 44.0 4.48e-01 70.5% 65.0%
2036627 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.70 53.0 5.05e-01 82.0% 70.4%
3949052 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 61.0 5.39e-01 100.0% 74.4%
4214150 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.69 62.0 5.08e-01 100.0% 60.9%
5038766 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.68 50.0 4.57e-01 78.7% 98.8%
3944005 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.68 60.0 4.66e-01 100.0% 48.9%
3303889 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.67 50.0 4.64e-01 100.0% 64.0%
4222919 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.67 59.0 4.69e-01 100.0% 52.8%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.66 48.0 4.50e-01 96.7% 62.7%
5038531 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.65 48.0 4.78e-01 80.3% 95.4%
2855773 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.65 58.0 4.61e-01 100.0% 56.1%
3423337 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.65 48.0 4.36e-01 100.0% 60.0%
4104079 1.1.7.23 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 0.65 56.0 4.50e-01 100.0% 70.4%
3609629 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 48.0 4.12e-01 100.0% 50.5%
4060133 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 55.0 4.95e-01 100.0% 68.9%
4452870 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 55.0 4.92e-01 100.0% 68.9%
4484920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 53.0 4.69e-01 96.7% 66.3%
4973665 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 54.0 4.87e-01 96.7% 74.1%
4229140 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 54.0 4.85e-01 100.0% 70.0%
4946268 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 53.0 4.65e-01 96.7% 65.3%
1567470 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 51.0 4.48e-01 96.7% 64.9%
4381190 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 52.0 4.46e-01 100.0% 61.9%
5024532 70.3.1.12 beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.61 54.0 4.85e-01 100.0% 90.6%
5038529 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.60 47.0 4.67e-01 86.9% 89.2%
4144942 70.3.1.12 beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.60 50.0 4.55e-01 96.7% 89.4%
5019871 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.59 48.0 4.77e-01 90.2% 86.2%
4968409 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.59 49.0 4.31e-01 100.0% 69.0%
3277790 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 50.0 4.28e-01 100.0% 64.8%
3963302 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 50.0 4.28e-01 100.0% 61.0%
4531569 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.58 46.0 4.69e-01 100.0% 91.7%
3436078 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.57 47.0 3.92e-01 98.4% 57.5%
4002697 5090.2.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain 0.57 48.0 3.54e-01 96.7% 85.0%
4069807 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 46.0 4.07e-01 100.0% 65.0%
3315718 1.1.11.6 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.55 46.0 4.05e-01 98.4% 65.3%
5036655 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 37.0 3.76e-01 96.7% 73.3%
3802051 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.96e-01 100.0% 65.3%
5018860 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.53 40.0 3.03e-01 82.0% 66.0%
3875076 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 37.0 2.93e-01 100.0% 31.7%
3535755 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.52 36.0 2.89e-01 100.0% 32.9%
4943011 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.52 47.0 4.03e-01 100.0% 67.4%
3566431 389.1.2.1 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.52 35.0 3.56e-01 72.1% 78.3%
2884685 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.50 40.0 3.13e-01 100.0% 42.1%
D2 high residues 131-293
PDB