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MK967393.1__QDM57104.1__SEA_WHACK_41__00041

Bact-Vir

MK967393.1__QDM57104.1__SEA_WHACK_41__00041

Identity

Accession:
MK967393 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-64
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 60.0 6.32e-01 83.9% 100.0%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 5.98e-01 98.2% 100.0%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 53.0 4.89e-01 80.4% 63.9%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.63e-01 94.6% 93.1%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.65e-01 94.6% 60.3%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.10e-01 98.2% 76.2%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 58.0 5.45e-01 100.0% 80.3%
3gwnA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.65 52.0 4.24e-01 92.9% 94.7%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 54.0 5.04e-01 100.0% 81.1%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.64 49.0 3.51e-01 87.5% 76.5%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.63 54.0 4.82e-01 100.0% 76.8%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.63 51.0 4.19e-01 91.1% 95.3%
1yn9B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 50.0 3.61e-01 91.1% 94.1%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.61 49.0 4.13e-01 94.6% 96.2%
1ig8A03 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.60 50.0 3.29e-01 100.0% 25.4%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 50.0 4.03e-01 100.0% 88.4%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 48.0 3.78e-01 98.2% 53.7%
1iqcA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.58 46.0 3.56e-01 98.2% 66.9%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 47.0 4.53e-01 96.4% 87.9%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 46.0 4.55e-01 98.2% 90.0%
3kc2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 51.0 3.66e-01 100.0% 45.1%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 42.0 4.03e-01 98.2% 68.1%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 48.0 3.53e-01 100.0% 34.3%
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 43.0 4.27e-01 94.6% 82.8%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.56 45.0 2.99e-01 85.7% 23.8%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 48.0 4.53e-01 100.0% 80.0%
3hdiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 45.0 3.18e-01 92.9% 69.2%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 39.0 3.64e-01 82.1% 88.9%
1a5aB02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 43.0 2.94e-01 89.3% 81.3%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 45.0 4.36e-01 100.0% 83.8%
2eggB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.54 46.0 3.48e-01 100.0% 84.7%
4qysA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 2.97e-01 98.2% 68.7%
4cxjA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.52 36.0 2.78e-01 73.2% 58.8%
ECOD (90)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927588 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 71.0 6.40e-01 100.0% 66.7%
4929815 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 67.0 6.40e-01 100.0% 73.8%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 68.0 6.68e-01 100.0% 83.3%
4978898 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 62.0 6.70e-01 83.9% 100.0%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.83 66.0 6.65e-01 91.1% 87.3%
4979322 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.83 65.0 6.04e-01 94.6% 68.6%
3569103 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.82 57.0 4.68e-01 85.7% 41.0%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 67.0 6.75e-01 100.0% 90.9%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 65.0 6.39e-01 100.0% 80.0%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 70.0 7.15e-01 100.0% 96.4%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.81 63.0 6.64e-01 98.2% 96.0%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 65.0 6.14e-01 98.2% 73.8%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 69.0 6.73e-01 94.6% 88.3%
5049118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 65.0 6.21e-01 100.0% 78.5%
5046292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 63.0 5.54e-01 100.0% 60.0%
3884711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 64.0 6.12e-01 98.2% 78.5%
5053659 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.78 65.0 6.18e-01 100.0% 78.5%
3620979 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 65.0 6.59e-01 100.0% 94.5%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 61.0 6.16e-01 100.0% 85.5%
4053154 101.1.1.16 alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA 0.77 61.0 5.81e-01 85.7% 73.8%
4952724 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 69.0 5.27e-01 100.0% 69.6%
4953748 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 68.0 6.20e-01 100.0% 96.0%
5006610 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 59.0 5.77e-01 100.0% 76.7%
3203378 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 63.0 6.06e-01 100.0% 80.0%
5053360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 67.0 5.87e-01 100.0% 87.1%
3893171 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.76 62.0 6.09e-01 98.2% 85.0%
4031678 101.1.2.20 alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.75 60.0 5.78e-01 96.4% 76.9%
5013811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 65.0 6.58e-01 100.0% 96.4%
3589089 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.75 67.0 5.44e-01 100.0% 75.2%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 5.81e-01 100.0% 74.3%
3738343 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.75 64.0 6.30e-01 100.0% 90.0%
4952347 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 67.0 5.80e-01 100.0% 100.0%
3632862 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 61.0 4.96e-01 100.0% 47.3%
3575777 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.74 60.0 6.30e-01 100.0% 100.0%
3603740 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 63.0 5.82e-01 98.2% 74.3%
3715143 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.55e-01 98.2% 65.0%
3955434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 6.11e-01 98.2% 98.0%
3518121 101.1.4.1 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.74 56.0 4.34e-01 80.4% 40.0%
5023957 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.74 60.0 5.33e-01 100.0% 62.5%
3625015 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 64.0 5.84e-01 100.0% 73.3%
5026209 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 57.0 5.60e-01 98.2% 80.0%
3857681 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.73 65.0 5.45e-01 100.0% 62.1%
3901880 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 57.0 5.46e-01 98.2% 75.4%
4014609 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.72 60.0 5.77e-01 100.0% 83.1%
4953119 101.1.2.805 alpha arrays › HTH › HTH › winged helix domain › PF26350 0.72 55.0 3.94e-01 87.5% 28.3%
3632433 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 63.0 4.94e-01 100.0% 47.8%
5003693 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 58.0 5.53e-01 98.2% 78.5%
5007660 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.71 58.0 5.55e-01 98.2% 78.5%
4952808 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.76e-01 98.2% 92.7%
4944051 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 4.18e-01 100.0% 30.6%
5008720 101.1.1.548 alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.70 57.0 5.46e-01 98.2% 78.5%
4596907 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 63.0 5.83e-01 100.0% 97.1%
3958566 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.70 54.0 4.68e-01 85.7% 54.4%
5021354 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.70 56.0 5.35e-01 98.2% 76.9%
3224656 101.1.1.102 alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 0.69 60.0 4.87e-01 100.0% 55.5%
5041677 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 4.60e-01 92.9% 50.0%
3334149 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 59.0 6.00e-01 100.0% 100.0%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.96e-01 96.4% 65.3%
3814136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.76e-01 100.0% 96.4%
4928394 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.22e-01 96.4% 75.8%
3326259 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.68 51.0 5.36e-01 83.9% 98.0%
5057164 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.60e-01 100.0% 52.0%
3958858 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.67 58.0 4.50e-01 100.0% 88.5%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.66 57.0 5.03e-01 100.0% 64.7%
4890109 101.26.1.0 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain 0.66 48.0 4.20e-01 87.5% 50.0%
3311830 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.65 56.0 4.27e-01 98.2% 87.4%
4997662 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.54e-01 98.2% 49.1%
4961853 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.65 50.0 4.60e-01 85.7% 66.7%
4966213 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 5.16e-01 98.2% 80.0%
3363421 101.1.2.730 alpha arrays › HTH › HTH › winged helix domain › Eaf7 0.65 56.0 5.39e-01 100.0% 95.4%
3465761 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.65 53.0 4.07e-01 91.1% 88.5%
3454767 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 5.37e-01 96.4% 94.5%
3417440 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 54.0 4.18e-01 100.0% 87.4%
3684477 108.1.1.30 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.64 55.0 4.05e-01 98.2% 36.7%
3938376 109.4.1.2531 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARID 0.63 56.0 3.21e-01 100.0% 11.3%
4014593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 5.26e-01 100.0% 94.5%
3618842 101.1.1.244 alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS 0.62 51.0 4.86e-01 100.0% 77.1%
1165372 101.1.2.9 alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.62 54.0 4.04e-01 98.2% 43.5%
3198979 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.62 52.0 5.18e-01 100.0% 91.7%
3629063 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.62 49.0 3.37e-01 91.1% 75.5%
4978899 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 51.0 4.68e-01 100.0% 92.5%
3602476 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.60 44.0 4.43e-01 82.1% 87.3%
4027714 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.59 50.0 4.12e-01 100.0% 78.2%
4990074 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.58 48.0 4.79e-01 98.2% 100.0%
3532105 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.58 47.0 3.85e-01 100.0% 71.2%
5025960 101.1.1.558 alpha arrays › HTH › HTH › Three-helical HTH › DUF7523 0.58 47.0 4.79e-01 92.9% 100.0%
None 0.57 46.0 3.34e-01 92.9% 32.4%
4942515 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.56 46.0 3.39e-01 98.2% 34.7%
3759000 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 43.0 4.36e-01 100.0% 100.0%
4575783 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.52 42.0 3.10e-01 100.0% 32.4%