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MK967393.1__QDM57120.1__SEA_WHACK_57__00057
Bact-VirMK967393.1__QDM57120.1__SEA_WHACK_57__00057
Identity
- Accession:
- MK967393 ↗
- Kingdom:
- phage
Quality
62.3
mean pLDDT
Taxonomy
TaxID: 2591132
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 237-288
D2
high
residues 311-427
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iygA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 40.0 | 3.87e-01 | 73.5% | 49.6% |
| 2v5cA03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.66 | 45.0 | 4.41e-01 | 70.1% | 74.6% |
| 4j5tA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.66 | 51.0 | 3.36e-01 | 81.2% | 31.0% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.64 | 40.0 | 4.07e-01 | 100.0% | 64.6% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.63 | 43.0 | 4.10e-01 | 70.1% | 76.8% |
| 8hk0C01 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.63 | 43.0 | 4.01e-01 | 70.9% | 71.3% |
| 7zcvA02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 34.0 | 2.83e-01 | 73.5% | 29.5% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.61 | 39.0 | 4.55e-01 | 78.6% | 91.5% |
| 1hn0A02 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.58 | 46.0 | 3.18e-01 | 82.9% | 63.0% |
| 1dkxA02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 33.0 | 4.03e-01 | 76.1% | 85.0% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.56 | 31.0 | 4.16e-01 | 92.3% | 100.0% |
| 3fmsA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.55 | 50.0 | 4.74e-01 | 100.0% | 98.6% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.54 | 38.0 | 4.29e-01 | 77.8% | 92.4% |
| 6ljaA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.54 | 45.0 | 3.24e-01 | 91.5% | 49.7% |
| 4p9fA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.54 | 48.0 | 4.44e-01 | 95.7% | 98.6% |
| 3t9oB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.53 | 45.0 | 4.51e-01 | 88.9% | 92.5% |
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 37.0 | 2.90e-01 | 73.5% | 84.6% |
| 3vw5A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 42.0 | 3.08e-01 | 96.6% | 92.5% |
| 4mu9B00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 43.0 | 3.19e-01 | 99.1% | 93.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944739 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 44.0 | 4.32e-01 | 71.8% | 56.0% |
| 3962654 | 1153.1.1.1 ↗ | alpha superhelices › Helical domain in conserved hypothetical protein Rv3899c › Helical domain in conserved hypothetical protein Rv3899c › Helical domain in conserved hypothetical protein Rv3899c › DUF5631 | 0.71 | 48.0 | 5.23e-01 | 70.1% | 93.0% |
| 4025538 | 109.4.1.280 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PSD13_N | 0.67 | 40.0 | 3.03e-01 | 70.1% | 25.1% |
| 4862446 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.66 | 49.0 | 3.97e-01 | 77.8% | 42.0% |
| 3701929 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 48.0 | 3.73e-01 | 77.8% | 43.1% |
| 2041631 | 1153.1.1.1 ↗ | alpha superhelices › Helical domain in conserved hypothetical protein Rv3899c › Helical domain in conserved hypothetical protein Rv3899c › Helical domain in conserved hypothetical protein Rv3899c › DUF5631 | 0.64 | 50.0 | 5.31e-01 | 83.8% | 91.3% |
| 3205418 | 5029.1.1.0 ↗ | extended segments › Oligosaccharyltransferase subunit ost4p › Oligosaccharyltransferase subunit ost4p › Oligosaccharyltransferase subunit ost4p | 0.63 | 40.0 | 3.47e-01 | 79.5% | 41.7% |
| 4365553 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.62 | 40.0 | 4.54e-01 | 81.2% | 84.4% |
| 3672278 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.62 | 40.0 | 4.33e-01 | 81.2% | 76.0% |
| 3731377 | 603.3.1.0 ↗ | alpha bundles › STAT-like › CAPPD, an extracellular domain of amyloid beta A4 protein › CAPPD, an extracellular domain of amyloid beta A4 protein | 0.61 | 42.0 | 3.24e-01 | 70.1% | 58.8% |
| 3740591 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 50.0 | 3.04e-01 | 88.0% | 32.4% |
| 4009525 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.59 | 54.0 | 4.98e-01 | 99.1% | 98.7% |
| 3214864 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 40.0 | 3.70e-01 | 70.9% | 64.0% |
| 5058346 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.57 | 41.0 | 2.80e-01 | 75.2% | 48.0% |
| 3887172 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 49.0 | 3.57e-01 | 97.4% | 81.7% |
| 3322451 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 40.0 | 3.49e-01 | 73.5% | 48.6% |
| 3934845 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.56 | 51.0 | 3.85e-01 | 100.0% | 96.8% |
| 3955621 | 603.5.1.33 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like › SLAC1 | 0.55 | 41.0 | 3.75e-01 | 77.8% | 72.3% |
| 4535244 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.55 | 35.0 | 3.62e-01 | 81.2% | 68.2% |
| 4170006 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.55 | 35.0 | 3.78e-01 | 81.2% | 75.0% |
| 4085203 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.52 | 41.0 | 3.96e-01 | 81.2% | 82.3% |
| 4012158 | 3543.1.1.0 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel | 0.50 | 45.0 | 3.73e-01 | 97.4% | 81.5% |
| 4998499 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.50 | 41.0 | 4.16e-01 | 91.5% | 84.9% |
D3
high
residues 449-496
Domain cluster:
rep: MT889384.1__QOP65919.1__SEA_STLSCUM_56__00056__D159-210
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.65 | 51.0 | 4.75e-01 | 97.9% | 89.9% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.62 | 48.0 | 4.31e-01 | 87.5% | 100.0% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 51.0 | 4.29e-01 | 100.0% | 70.0% |
| 6ijfC01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.61 | 51.0 | 4.22e-01 | 100.0% | 57.0% |
| 2bf6A02 | 2.40.220.10 | Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 | 0.60 | 46.0 | 4.17e-01 | 85.4% | 86.4% |
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.59 | 50.0 | 4.40e-01 | 97.9% | 76.7% |
| 1yvuA03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 38.0 | 2.87e-01 | 87.5% | 98.7% |
| 1ggpB02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.52 | 39.0 | 3.05e-01 | 87.5% | 84.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943047 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.62 | 49.0 | 3.23e-01 | 89.6% | 97.7% |
| 4512995 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.61 | 51.0 | 4.64e-01 | 100.0% | 90.0% |
| 3396598 | 2496.1.1.1 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO | 0.59 | 45.0 | 2.96e-01 | 89.6% | 64.2% |
| 3634374 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.58 | 48.0 | 4.80e-01 | 93.8% | 92.0% |
| 4334851 | 3820.1.1.1 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI | 0.57 | 44.0 | 3.18e-01 | 89.6% | 91.6% |
| None | — | 0.52 | 36.0 | 2.30e-01 | 79.2% | 30.1% | |
| 4867395 | 3820.1.1.1 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI | 0.52 | 40.0 | 2.84e-01 | 87.5% | 89.2% |
| 3383348 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.52 | 39.0 | 2.84e-01 | 87.5% | 99.4% |
D4
medium
residues 7-169