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MK967393.1__QDM57134.1__SEA_WHACK_71__00071
Bact-VirMK967393.1__QDM57134.1__SEA_WHACK_71__00071
Identity
- Accession:
- MK967393 ↗
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Taxonomy
TaxID: 2591132
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-132
Domain cluster:
rep: OQ709222.1__WGH21898.1__SEA_TROGGLEHUMPER_13__00013__D2-174
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19730.5 best | DUF6221 | 60.0 | 5.30e-16 | 100.0% | 86.9% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 46.0 | 4.72e-01 | 82.7% | 64.7% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.74 | 38.0 | 4.07e-01 | 83.5% | 56.2% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 39.0 | 4.56e-01 | 100.0% | 74.7% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.72 | 51.0 | 4.75e-01 | 100.0% | 58.6% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 42.0 | 5.33e-01 | 74.0% | 98.7% |
| 3ck6C02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.70 | 42.0 | 4.32e-01 | 80.3% | 62.2% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.69 | 42.0 | 5.36e-01 | 70.9% | 100.0% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 39.0 | 5.09e-01 | 70.1% | 100.0% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.68 | 29.0 | 2.92e-01 | 77.2% | 37.2% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.68 | 43.0 | 5.19e-01 | 77.2% | 97.6% |
| 2oexA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.65 | 52.0 | 5.03e-01 | 100.0% | 76.2% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.63 | 33.0 | 3.18e-01 | 86.6% | 42.7% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 41.0 | 4.26e-01 | 100.0% | 70.3% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.63 | 44.0 | 3.98e-01 | 72.4% | 100.0% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.62 | 57.0 | 4.63e-01 | 100.0% | 78.8% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.62 | 44.0 | 4.83e-01 | 84.3% | 92.0% |
| 4ysxC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.62 | 45.0 | 4.26e-01 | 98.4% | 62.7% |
| 6vq6H01 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 48.0 | 4.10e-01 | 83.5% | 63.2% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 40.0 | 3.97e-01 | 83.5% | 62.7% |
| 3ok8A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.60 | 54.0 | 4.56e-01 | 100.0% | 79.0% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.60 | 45.0 | 3.94e-01 | 78.0% | 94.0% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.59 | 43.0 | 4.30e-01 | 100.0% | 73.8% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 34.0 | 3.69e-01 | 74.0% | 67.3% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.58 | 42.0 | 3.76e-01 | 75.6% | 94.0% |
| 8a1gC01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.58 | 53.0 | 4.68e-01 | 100.0% | 80.1% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 46.0 | 3.71e-01 | 84.3% | 45.1% |
| 3q23A03 | 6.10.140.1360 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 32.0 | 4.00e-01 | 90.6% | 94.4% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 42.0 | 4.57e-01 | 77.2% | 100.0% |
| 4al0A00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.57 | 42.0 | 4.03e-01 | 100.0% | 67.1% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 39.0 | 4.50e-01 | 74.0% | 95.7% |
| 7wu7601 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 41.0 | 4.57e-01 | 78.7% | 98.0% |
| 1oahA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 38.0 | 3.65e-01 | 86.6% | 61.3% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.54 | 49.0 | 4.09e-01 | 97.6% | 72.0% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.54 | 38.0 | 3.58e-01 | 87.4% | 58.7% |
| 4flaC00 | 6.10.250.2560 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 39.0 | 3.92e-01 | 80.3% | 75.6% |
| 2jswA00 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.52 | 45.0 | 3.91e-01 | 100.0% | 62.4% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.51 | 39.0 | 4.00e-01 | 81.1% | 85.7% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4972547 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.70 | 46.0 | 5.15e-01 | 93.7% | 85.0% |
| 3929433 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.67 | 39.0 | 4.18e-01 | 78.7% | 66.4% |
| 4977789 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.67 | 41.0 | 3.86e-01 | 82.7% | 49.7% |
| 3733568 | 192.8.1.342 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt | 0.66 | 41.0 | 4.12e-01 | 76.4% | 61.5% |
| 3993457 | 601.1.2.90 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Not3 | 0.66 | 48.0 | 4.68e-01 | 100.0% | 68.6% |
| 3528889 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.64 | 47.0 | 3.76e-01 | 82.7% | 41.3% |
| 3887929 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.64 | 41.0 | 4.25e-01 | 100.0% | 68.3% |
| 3616792 | 633.6.1.8 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 | 0.63 | 49.0 | 4.27e-01 | 100.0% | 53.5% |
| 3625044 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.62 | 41.0 | 4.53e-01 | 84.3% | 81.9% |
| 1000517 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.62 | 40.0 | 4.37e-01 | 83.5% | 81.2% |
| 3182561 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.61 | 48.0 | 4.35e-01 | 83.5% | 63.0% |
| 3747865 | 5050.1.1.6 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP | 0.61 | 47.0 | 3.59e-01 | 81.1% | 86.6% |
| 3628600 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.61 | 48.0 | 4.51e-01 | 81.9% | 96.7% |
| 4028685 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.60 | 40.0 | 4.34e-01 | 80.3% | 79.1% |
| 3305747 | 192.2.1.18 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING | 0.60 | 47.0 | 4.61e-01 | 82.7% | 82.1% |
| 3785065 | 633.23.1.31 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DUF202 | 0.59 | 49.0 | 4.86e-01 | 100.0% | 86.9% |
| 4324117 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.59 | 47.0 | 3.39e-01 | 83.5% | 30.3% |
| 3471229 | 148.1.3.13 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 | 0.59 | 37.0 | 2.77e-01 | 78.7% | 24.8% |
| 3290432 | 5086.1.1.184 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF4407 | 0.58 | 41.0 | 4.50e-01 | 79.5% | 91.0% |
| 3483938 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.58 | 53.0 | 4.52e-01 | 100.0% | 69.0% |
| 4025072 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.57 | 41.0 | 4.29e-01 | 74.0% | 80.9% |
| 3413217 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 42.0 | 4.43e-01 | 79.5% | 84.3% |
| 3741919 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 41.0 | 4.61e-01 | 74.8% | 95.0% |
| 139279 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 39.0 | 4.50e-01 | 74.0% | 95.7% |
| 3707539 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.57 | 40.0 | 3.17e-01 | 73.2% | 40.4% |
| 3571689 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.56 | 44.0 | 4.14e-01 | 81.1% | 89.3% |
| 3417153 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.56 | 49.0 | 4.95e-01 | 95.3% | 94.4% |
| 3911413 | 148.1.3.13 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 | 0.56 | 43.0 | 3.21e-01 | 80.3% | 43.5% |
| 4410029 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.56 | 41.0 | 3.60e-01 | 100.0% | 49.0% |
| 3828336 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.56 | 43.0 | 4.53e-01 | 80.3% | 93.9% |
| 3787791 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.56 | 43.0 | 4.33e-01 | 81.9% | 85.4% |
| 3308586 | 4323.1.1.2 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C | 0.56 | 41.0 | 3.74e-01 | 77.2% | 95.9% |
| 3404343 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.55 | 38.0 | 4.43e-01 | 71.7% | 100.0% |
| 3600606 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.55 | 50.0 | 4.42e-01 | 100.0% | 69.7% |
| 3188900 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 40.0 | 3.98e-01 | 77.2% | 72.3% |
| 3505548 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 44.0 | 4.19e-01 | 83.5% | 73.8% |
| 3716174 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.55 | 40.0 | 4.29e-01 | 74.8% | 87.3% |
| 3263029 | 5050.1.1.8 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1 | 0.55 | 45.0 | 3.45e-01 | 86.6% | 58.5% |
| 3904307 | 3755.4.1.70 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › KIF9 | 0.55 | 42.0 | 4.17e-01 | 81.1% | 76.3% |
| 5064040 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 44.0 | 3.68e-01 | 83.5% | 76.6% |
| 5029796 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 42.0 | 4.37e-01 | 81.1% | 85.8% |
| 3597173 | 3755.3.1.557 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › SNARE | 0.54 | 41.0 | 3.60e-01 | 81.9% | 52.6% |
| 3588761 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.54 | 43.0 | 3.16e-01 | 83.5% | 33.7% |
| 3208369 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.53 | 46.0 | 4.01e-01 | 91.3% | 63.2% |
| 3719904 | 148.1.3.13 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 | 0.53 | 46.0 | 3.29e-01 | 93.7% | 38.6% |
| 3732306 | 2004.1.1.366 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N | 0.53 | 41.0 | 2.97e-01 | 80.3% | 70.4% |
| 4029478 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.53 | 38.0 | 4.19e-01 | 95.3% | 91.4% |
| 3399005 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.52 | 36.0 | 4.15e-01 | 74.0% | 100.0% |
| 5084060 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.51 | 40.0 | 3.76e-01 | 83.5% | 71.6% |