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MK972831.1__QEA09638.1__Sfin2_69__00069

Bact-Vir

MK972831.1__QEA09638.1__Sfin2_69__00069

Identity

Accession:
MK972831 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-35
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 57.0 3.33e-01 75.0% 10.0%
2h4oA00 6.20.120.10 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 52.0 4.38e-01 84.4% 46.8%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.70 51.0 4.53e-01 90.6% 56.4%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 56.0 3.88e-01 100.0% 41.9%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.67 49.0 4.37e-01 90.6% 57.1%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 50.0 4.08e-01 93.8% 39.5%
3mnfA00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.63 46.0 2.81e-01 87.5% 11.1%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 43.0 2.94e-01 81.2% 20.0%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 3.46e-01 78.1% 32.9%
2kq8A01 4.10.80.110 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.63 44.0 4.19e-01 81.2% 95.7%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.62 44.0 2.78e-01 84.4% 15.8%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.61 44.0 3.13e-01 75.0% 20.4%
3h5xA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.61 47.0 3.55e-01 96.9% 74.7%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.61 48.0 3.33e-01 100.0% 42.6%
5e0sB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.59 44.0 2.79e-01 90.6% 59.2%
6nifA01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.59 41.0 2.63e-01 84.4% 15.2%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 41.0 2.40e-01 75.0% 16.8%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 39.0 2.58e-01 100.0% 19.1%
1x0gA00 2.60.300.12 Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain 0.57 38.0 2.99e-01 84.4% 45.1%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.14e-01 71.9% 25.6%
2f48A01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 42.0 2.59e-01 100.0% 21.4%
2r8rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 2.58e-01 81.2% 23.9%
4gu4A01 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.57 41.0 3.89e-01 90.6% 55.8%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.57 38.0 2.28e-01 87.5% 8.0%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.56 43.0 2.57e-01 90.6% 35.7%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.45e-01 96.9% 42.7%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.19e-01 87.5% 37.1%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.55 39.0 2.17e-01 78.1% 6.1%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 38.0 2.80e-01 71.9% 42.4%
5yl6A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.55 42.0 2.75e-01 90.6% 50.6%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 2.96e-01 81.2% 39.8%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.55 40.0 2.76e-01 100.0% 35.9%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 2.77e-01 71.9% 56.4%
4i62A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 42.0 2.83e-01 87.5% 79.2%
1qmgB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 40.0 2.50e-01 84.4% 84.7%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.54 39.0 2.71e-01 100.0% 27.8%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 44.0 3.58e-01 100.0% 82.4%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 40.0 3.43e-01 100.0% 47.9%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.54 36.0 2.77e-01 90.6% 81.4%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.06e-01 84.4% 40.5%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.53 42.0 2.75e-01 100.0% 34.1%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.33e-01 93.8% 45.3%
1i77A00 3.90.10.10 Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 0.52 38.0 2.84e-01 87.5% 26.2%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.52 38.0 3.12e-01 87.5% 60.6%
1sqwA01 3.10.450.220 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.11e-01 100.0% 58.1%
2mhyA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 35.0 3.13e-01 71.9% 68.4%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 38.0 2.20e-01 81.2% 53.0%
2wshA00 3.40.1440.40 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.51 37.0 2.56e-01 71.9% 17.2%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 38.0 2.49e-01 93.8% 36.0%
1ce7A02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.50 35.0 2.98e-01 96.9% 59.5%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3957580 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.84 59.0 3.71e-01 75.0% 16.1%
4030191 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.83 58.0 3.09e-01 75.0% 3.3%
4122525 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.83 64.0 4.89e-01 93.8% 37.3%
5051446 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.81 66.0 4.24e-01 90.6% 20.7%
5025131 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.74 53.0 3.43e-01 81.2% 16.7%
4027310 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.72 57.0 3.78e-01 90.6% 49.2%
4190768 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.70 54.0 3.28e-01 90.6% 15.1%
3937387 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.67 48.0 3.35e-01 81.2% 21.7%
3246665 60.1.2.2 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.65 47.0 2.75e-01 87.5% 8.7%
4457507 60.1.2.2 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.65 47.0 2.85e-01 87.5% 10.8%
5054301 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.65 47.0 3.61e-01 90.6% 32.6%
4962675 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 48.0 2.79e-01 87.5% 14.6%
4208861 2004.1.1.224 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA 0.62 45.0 2.80e-01 96.9% 12.7%
3739970 109.4.1.64 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.62 46.0 2.78e-01 84.4% 18.5%
3980132 823.1.1.1 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.62 50.0 4.26e-01 93.8% 65.5%
4965263 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 44.0 2.75e-01 84.4% 20.5%
4026935 4952.1.1.0 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.60 48.0 3.19e-01 100.0% 48.4%
338175 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.60 42.0 2.71e-01 84.4% 15.4%
4007555 1075.4.1.2 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2 0.60 42.0 2.48e-01 78.1% 7.8%
3297110 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 44.0 3.17e-01 81.2% 86.0%
3566304 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 41.0 3.99e-01 84.4% 60.0%
3512891 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.59 41.0 2.39e-01 84.4% 7.0%
4994983 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 3.35e-01 75.0% 34.3%
3481148 859.1.1.0 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.58 40.0 2.58e-01 84.4% 15.5%
4967853 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 41.0 3.71e-01 84.4% 49.1%
3990730 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.57 47.0 2.62e-01 100.0% 84.3%
5005743 2484.1.1.87 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C 0.57 43.0 2.79e-01 96.9% 22.2%
5061096 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 43.0 3.36e-01 87.5% 35.0%
4966339 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 42.0 3.50e-01 78.1% 40.0%
4977157 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.57 43.0 3.96e-01 78.1% 53.3%
3579472 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 38.0 2.72e-01 81.2% 20.0%
4636695 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.56 40.0 3.31e-01 78.1% 38.2%
3207695 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 43.0 3.87e-01 84.4% 54.0%
3986582 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.55 43.0 2.82e-01 93.8% 21.5%
4457759 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.55 42.0 3.08e-01 93.8% 31.1%
4986319 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 42.0 3.76e-01 84.4% 66.0%
3789193 109.4.1.560 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mus7 0.55 41.0 2.26e-01 90.6% 12.0%
3293552 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.55 39.0 2.60e-01 81.2% 80.4%
3712081 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 37.0 2.77e-01 81.2% 23.6%
5079277 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 40.0 3.47e-01 84.4% 53.4%
3214720 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 40.0 3.04e-01 90.6% 32.6%
5061423 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 40.0 2.34e-01 90.6% 66.1%
3737978 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.54 40.0 2.87e-01 84.4% 27.5%
4959094 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 39.0 3.32e-01 71.9% 41.8%
5080494 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.53 40.0 2.70e-01 90.6% 33.1%
4833001 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.53 37.0 3.42e-01 90.6% 76.4%
4947228 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 2.87e-01 81.2% 34.0%
5031930 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.52 37.0 3.65e-01 81.2% 67.5%
3467049 314.1.1.1 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.52 37.0 2.38e-01 81.2% 20.2%
4993116 1.1.3.1 beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.52 36.0 3.44e-01 90.6% 68.0%
3593339 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 37.0 2.73e-01 81.2% 22.6%
3559714 377.1.1.16 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.52 39.0 3.63e-01 84.4% 60.0%
4955560 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 40.0 3.48e-01 84.4% 52.7%
3623035 2004.5.1.3 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.51 35.0 2.14e-01 71.9% 16.0%
3385992 3962.1.1.7 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › DUF7814 0.51 40.0 2.56e-01 87.5% 22.0%
5083603 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.51 41.0 2.72e-01 75.0% 17.1%
3611250 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 38.0 2.61e-01 75.0% 62.8%
1280955 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 35.0 3.21e-01 87.5% 62.3%
2066836 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.50 40.0 3.13e-01 87.5% 35.9%
4082185 2004.1.1.61 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FTHFS 0.50 40.0 2.24e-01 87.5% 13.1%
3743792 377.1.1.4 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.50 36.0 2.69e-01 71.9% 34.7%
4961224 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.50 36.0 3.05e-01 84.4% 38.6%
3584720 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.50 37.0 3.50e-01 84.4% 82.2%
4017372 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 36.0 2.69e-01 81.2% 22.6%