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MK977696.1__QDF18805.1__SEA_SCENTAE_86__00085
Bact-VirMK977696.1__QDF18805.1__SEA_SCENTAE_86__00085
Identity
- Accession:
- MK977696 ↗
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Taxonomy
TaxID: 2571251
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 73-138
Domain cluster:
rep: IMGVR_UViG_3300025327_001519-3300025327-Ga0209751_100075766__D23-82
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 24.9 | 2.60e-05 | 66.7% | 97.9% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.81 | 52.0 | 3.96e-01 | 80.3% | 30.5% |
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.75 | 51.0 | 4.08e-01 | 78.8% | 37.4% |
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.74 | 51.0 | 4.89e-01 | 78.8% | 63.5% |
| 3goxA03 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.67 | 56.0 | 5.31e-01 | 100.0% | 77.8% |
| 3hcsA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.66 | 34.0 | 3.82e-01 | 77.3% | 61.5% |
| 2xzm500 | 3.30.1740.20 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 | 0.65 | 46.0 | 4.03e-01 | 74.2% | 70.4% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.64 | 33.0 | 4.21e-01 | 77.3% | 94.1% |
| 2uz8A01 | 3.40.30.90 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.63 | 34.0 | 3.74e-01 | 98.5% | 64.8% |
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.61 | 43.0 | 4.70e-01 | 86.4% | 90.7% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.60 | 52.0 | 3.98e-01 | 100.0% | 51.2% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.58 | 49.0 | 4.29e-01 | 100.0% | 73.3% |
| 5gxuB02 | 1.20.990.10 | Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 | 0.51 | 40.0 | 3.42e-01 | 89.4% | 95.8% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3938379 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.85 | 56.0 | 5.72e-01 | 81.8% | 69.2% |
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.85 | 64.0 | 5.19e-01 | 100.0% | 45.2% |
| 3705738 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.84 | 55.0 | 5.74e-01 | 80.3% | 73.3% |
| 3739083 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.81 | 58.0 | 5.54e-01 | 80.3% | 65.3% |
| 3703254 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.81 | 58.0 | 5.36e-01 | 80.3% | 61.3% |
| 3745376 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.78 | 51.0 | 4.90e-01 | 77.3% | 58.7% |
| 3286658 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.78 | 69.0 | 5.49e-01 | 98.5% | 91.5% |
| 3717337 | 376.1.1.165 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FYVE | 0.77 | 46.0 | 4.46e-01 | 78.8% | 53.3% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.77 | 70.0 | 5.81e-01 | 98.5% | 60.0% |
| 3623406 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.76 | 49.0 | 4.31e-01 | 83.3% | 45.3% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.76 | 67.0 | 6.47e-01 | 98.5% | 85.3% |
| 3847015 | 192.7.1.79 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FYVE_2 | 0.76 | 48.0 | 5.00e-01 | 78.8% | 70.0% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 69.0 | 6.44e-01 | 100.0% | 85.0% |
| 3981149 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 67.0 | 6.30e-01 | 100.0% | 84.8% |
| 3740227 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.74 | 50.0 | 4.92e-01 | 77.3% | 65.7% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 63.0 | 6.02e-01 | 100.0% | 84.0% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 57.0 | 5.27e-01 | 100.0% | 67.1% |
| 4966035 | 376.1.3.98 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 | 0.72 | 51.0 | 5.30e-01 | 75.8% | 83.3% |
| 3913312 | 377.1.1.50 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 | 0.71 | 46.0 | 5.32e-01 | 78.8% | 97.8% |
| 3858830 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.71 | 54.0 | 4.23e-01 | 80.3% | 40.8% |
| 3482217 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.71 | 49.0 | 5.17e-01 | 72.7% | 80.0% |
| 3815866 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.71 | 49.0 | 5.18e-01 | 74.2% | 80.0% |
| 3607878 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.69 | 49.0 | 4.50e-01 | 74.2% | 83.5% |
| 3715785 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.68 | 52.0 | 4.86e-01 | 80.3% | 67.1% |
| 5024194 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 49.0 | 4.71e-01 | 75.8% | 82.7% |
| 3695527 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.67 | 61.0 | 4.95e-01 | 100.0% | 55.8% |
| 3269939 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 42.0 | 3.85e-01 | 75.8% | 48.2% |
| 1442743 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.67 | 43.0 | 4.47e-01 | 75.8% | 70.5% |
| 3539459 | 386.1.1.3 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF | 0.67 | 34.0 | 3.78e-01 | 71.2% | 60.0% |
| 3356935 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.67 | 57.0 | 5.50e-01 | 92.4% | 82.7% |
| 3922396 | 386.1.1.3 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF | 0.67 | 34.0 | 3.96e-01 | 75.8% | 68.9% |
| 4352411 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 33.0 | 3.73e-01 | 71.2% | 60.0% |
| 5066402 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.66 | 47.0 | 4.72e-01 | 75.8% | 89.7% |
| 4030676 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 39.0 | 4.00e-01 | 77.3% | 61.5% |
| 3704076 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.63 | 42.0 | 3.79e-01 | 100.0% | 48.4% |
| 3977489 | 377.1.1.117 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF27493 | 0.63 | 44.0 | 4.97e-01 | 72.7% | 96.0% |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 44.0 | 4.47e-01 | 74.2% | 95.4% |
| 3414632 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.60 | 53.0 | 4.77e-01 | 97.0% | 93.3% |
| 3543123 | 4044.1.1.12 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › RH_dom | 0.60 | 46.0 | 4.18e-01 | 83.3% | 63.3% |
| 89916 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.60 | 52.0 | 3.95e-01 | 100.0% | 51.2% |
| 3736484 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 47.0 | 4.11e-01 | 84.8% | 83.2% |
| 3998594 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 42.0 | 4.05e-01 | 75.8% | 68.0% |
| 3185361 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.57 | 45.0 | 3.95e-01 | 100.0% | 56.2% |
| 3520111 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 41.0 | 4.21e-01 | 77.3% | 84.4% |
| 3805637 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.55 | 42.0 | 3.95e-01 | 81.8% | 68.8% |
| 3194280 | 389.1.1.124 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › MSC | 0.55 | 31.0 | 3.47e-01 | 84.8% | 72.0% |
| 3700533 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 49.0 | 3.21e-01 | 97.0% | 24.8% |