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MK977700.1__QDF19273.1__SEA_STICKYNOTE_80__00076

Bact-Vir

MK977700.1__QDF19273.1__SEA_STICKYNOTE_80__00076

Identity

Accession:
MK977700 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Ceetrepovirus› Corynebacterium_phage_Stickynote

TaxID: 2588503

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-114
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m8aA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.65 45.0 5.14e-01 92.6% 100.0%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 31.0 3.45e-01 78.7% 57.5%
2kohA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 45.0 4.32e-01 77.7% 76.6%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 39.0 4.31e-01 91.5% 84.9%
2o5fB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 41.0 3.47e-01 72.3% 57.4%
3bzcA05 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 34.0 3.39e-01 80.9% 54.2%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.56 39.0 3.49e-01 80.9% 50.8%
1c3kA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.55 42.0 3.62e-01 79.8% 88.1%
2w3sA05 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 47.0 4.59e-01 96.8% 97.1%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 41.0 3.19e-01 81.9% 34.4%
4d8mA03 2.100.10.40 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › 0.55 43.0 3.42e-01 85.1% 68.3%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 40.0 3.53e-01 79.8% 59.9%
3cxbA02 3.30.390.70 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Salmonella typhimurium protein 0.53 39.0 3.86e-01 81.9% 90.6%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 40.0 3.52e-01 79.8% 60.7%
3cymA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 45.0 3.55e-01 100.0% 68.6%
3e1tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 2.74e-01 75.5% 63.1%
2kouA00 3.30.160.380 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain 0.51 37.0 3.62e-01 76.6% 77.5%
4ew6A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 3.46e-01 93.6% 84.7%
4ia6B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.97e-01 90.4% 54.2%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 3.45e-01 93.6% 86.4%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 40.0 3.20e-01 85.1% 49.2%
2e6mA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 43.0 3.57e-01 100.0% 79.6%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.50 35.0 3.33e-01 72.3% 96.6%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 28.0 3.18e-01 81.9% 71.8%
5gvyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.50 38.0 3.34e-01 79.8% 88.3%
3q9tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 3.12e-01 93.6% 70.2%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 44.0 3.74e-01 100.0% 64.8%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 42.0 3.44e-01 93.6% 91.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4302484 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.66 51.0 4.82e-01 83.0% 80.0%
4014196 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.64 41.0 2.60e-01 88.3% 13.1%
3279082 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.63 38.0 4.19e-01 79.8% 74.7%
3955873 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.62 38.0 4.21e-01 79.8% 80.0%
6729 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.62 48.0 4.48e-01 83.0% 76.1%
5004322 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 49.0 4.98e-01 84.0% 97.8%
3974132 4152.2.1.0 ↗ a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.60 40.0 4.41e-01 72.3% 85.3%
3980806 636.1.1.2 ↗ alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › Sif 0.57 43.0 3.56e-01 81.9% 86.1%
1684039 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.57 42.0 3.52e-01 78.7% 69.3%
3338309 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.55 48.0 3.26e-01 94.7% 75.2%
3641066 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 47.0 2.93e-01 94.7% 51.7%
3308208 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.55 48.0 3.23e-01 98.9% 64.1%
11163 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.55 41.0 3.19e-01 81.9% 34.4%
1165027 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.55 43.0 3.35e-01 85.1% 63.6%
3438573 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 46.0 2.89e-01 94.7% 48.3%
3880845 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 38.0 3.75e-01 74.5% 97.1%
4384999 76.1.1.1 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.54 42.0 3.34e-01 83.0% 55.8%
5043802 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 42.0 3.93e-01 83.0% 93.9%
3664075 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.54 46.0 3.21e-01 95.7% 70.9%
3733615 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.54 41.0 2.81e-01 83.0% 97.0%
4021541 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.54 45.0 3.10e-01 92.6% 94.5%
None — 0.54 45.0 3.11e-01 94.7% 76.8%
3223923 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.53 45.0 2.42e-01 93.6% 6.8%
5022356 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.53 29.0 3.51e-01 81.9% 87.3%
3676005 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.53 45.0 3.00e-01 94.7% 27.0%
3208578 76.1.1.7 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 0.53 43.0 3.91e-01 87.2% 65.6%
3649710 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 45.0 2.79e-01 94.7% 48.9%
4380348 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 44.0 2.78e-01 93.6% 50.2%
3262497 11.1.1.801 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 0.53 40.0 3.66e-01 85.1% 94.8%
None — 0.52 46.0 3.13e-01 100.0% 67.1%
4186816 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.52 44.0 2.95e-01 92.6% 66.7%
2891953 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.52 28.0 2.44e-01 87.2% 34.0%
4677993 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.52 46.0 3.55e-01 100.0% 48.6%
3427947 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.52 43.0 3.53e-01 90.4% 50.3%
3824390 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.52 40.0 3.42e-01 81.9% 54.2%
4010891 2003.1.2.63 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N, GMC_oxred_C, NAD_binding_8 0.52 44.0 2.68e-01 92.6% 47.5%
3096910 2003.1.2.63 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N, GMC_oxred_C, NAD_binding_8 0.52 45.0 2.77e-01 94.7% 56.1%
3697980 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 44.0 2.73e-01 94.7% 49.0%
3368406 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.52 46.0 3.66e-01 100.0% 81.0%
3908305 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.52 45.0 3.57e-01 100.0% 49.3%
3274022 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.52 45.0 3.35e-01 98.9% 37.6%
5019105 2484.1.1.339 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › acVLRF1 0.52 39.0 3.56e-01 83.0% 63.9%
3729303 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 43.0 2.68e-01 94.7% 48.2%
None — 0.51 41.0 2.95e-01 89.4% 30.9%
2879361 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.51 42.0 3.54e-01 90.4% 58.0%
3412738 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.50 44.0 3.34e-01 100.0% 41.7%
1906032 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.50 35.0 2.92e-01 71.3% 65.1%
None — 0.50 43.0 2.95e-01 94.7% 67.2%