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MK977703.1__QDF19554.1__SEA_KUMOTTA_44__00044
Bact-VirMK977703.1__QDF19554.1__SEA_KUMOTTA_44__00044
Identity
- Accession:
- MK977703 ↗
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Taxonomy
TaxID: 2588498
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-104
Domain cluster:
rep: ON045087.1__UPU15914.1__X__00088__D84-142
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.69 | 59.0 | 4.16e-01 | 100.0% | 56.5% |
| 3gt2A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.65 | 52.0 | 4.09e-01 | 100.0% | 40.7% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.64 | 45.0 | 4.32e-01 | 73.8% | 100.0% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.63 | 49.0 | 4.61e-01 | 88.5% | 84.4% |
| 1xv2C01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.62 | 54.0 | 4.50e-01 | 100.0% | 61.3% |
| 3erbA02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.62 | 43.0 | 4.35e-01 | 90.2% | 73.3% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 50.0 | 4.84e-01 | 90.2% | 100.0% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 42.0 | 2.66e-01 | 72.1% | 47.1% |
| 2gu1A02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 45.0 | 3.82e-01 | 78.7% | 92.3% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.61 | 52.0 | 4.32e-01 | 100.0% | 60.5% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 4.86e-01 | 95.1% | 100.0% |
| 3rbyA01 | 2.40.128.320 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain | 0.60 | 41.0 | 3.10e-01 | 72.1% | 88.0% |
| 3vcaA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.60 | 45.0 | 3.69e-01 | 83.6% | 89.1% |
| 2qvwD02 | 2.170.260.10 | Mainly Beta › Beta Complex › paz domain › paz domain | 0.60 | 52.0 | 4.31e-01 | 100.0% | 99.1% |
| 7q04F01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.59 | 42.0 | 3.51e-01 | 75.4% | 97.2% |
| 2b1xA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.59 | 44.0 | 3.57e-01 | 82.0% | 86.5% |
| 2azpA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.58 | 41.0 | 3.11e-01 | 77.0% | 45.3% |
| 1m61A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 49.0 | 4.16e-01 | 96.7% | 96.2% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 49.0 | 4.65e-01 | 98.4% | 93.2% |
| 5d5gA00 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.57 | 45.0 | 3.79e-01 | 90.2% | 87.2% |
| 5kiqA02 | 3.10.20.890 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 38.0 | 3.70e-01 | 73.8% | 86.1% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 47.0 | 3.08e-01 | 100.0% | 51.5% |
| 4pbpA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 46.0 | 3.32e-01 | 100.0% | 95.1% |
| 2ablA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 42.0 | 3.68e-01 | 86.9% | 95.9% |
| 2x8nA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.54 | 38.0 | 3.35e-01 | 75.4% | 77.3% |
| 2ww8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.60e-01 | 90.2% | 79.2% |
| 3on7B00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.52 | 45.0 | 2.97e-01 | 100.0% | 23.0% |
| 2uz8A01 | 3.40.30.90 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.52 | 35.0 | 3.64e-01 | 70.5% | 94.4% |
| 3kcpA02 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.52 | 41.0 | 3.53e-01 | 86.9% | 57.6% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 37.0 | 3.79e-01 | 78.7% | 89.7% |
| 7x4nE01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.50 | 40.0 | 2.70e-01 | 100.0% | 43.1% |
| 4fl4F02 | 2.60.40.4130 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.08e-01 | 91.8% | 36.9% |
| 1aisA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.50 | 36.0 | 3.27e-01 | 75.4% | 67.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4342488 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 62.0 | 6.15e-01 | 98.4% | 95.2% |
| 4064452 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.70 | 59.0 | 4.62e-01 | 100.0% | 45.7% |
| 3893771 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.66 | 48.0 | 4.93e-01 | 77.0% | 95.0% |
| 4995784 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 53.0 | 5.04e-01 | 91.8% | 85.3% |
| 3959495 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.64 | 53.0 | 4.94e-01 | 100.0% | 73.1% |
| 4937102 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 38.0 | 2.92e-01 | 75.4% | 24.8% |
| 6452 | 4111.1.1.1 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy | 0.62 | 54.0 | 5.02e-01 | 100.0% | 88.3% |
| 3969424 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 46.0 | 2.85e-01 | 80.3% | 100.0% |
| 3992801 | 11.1.1.532 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 | 0.62 | 46.0 | 4.02e-01 | 78.7% | 95.6% |
| 3992824 | 11.1.1.532 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 | 0.62 | 46.0 | 4.07e-01 | 80.3% | 94.4% |
| 3971219 | 11.9.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase | 0.60 | 44.0 | 2.95e-01 | 78.7% | 63.2% |
| 4618103 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 49.0 | 5.00e-01 | 93.4% | 93.3% |
| 3978012 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.59 | 42.0 | 3.76e-01 | 91.8% | 51.1% |
| 3777778 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 49.0 | 3.26e-01 | 93.4% | 42.0% |
| 5054668 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 40.0 | 4.39e-01 | 80.3% | 100.0% |
| 5015352 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 47.0 | 4.36e-01 | 95.1% | 75.9% |
| 3744650 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 41.0 | 3.97e-01 | 82.0% | 68.6% |
| 3277146 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.57 | 41.0 | 2.58e-01 | 78.7% | 68.2% |
| 4965186 | 4.33.1.0 ↗ | beta barrels › SH3 | 0.56 | 42.0 | 3.86e-01 | 80.3% | 82.5% |
| 1824581 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.55 | 47.0 | 3.48e-01 | 95.1% | 86.3% |
| 3669050 | 310.2.1.48 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › TMEM62_C | 0.54 | 39.0 | 2.69e-01 | 80.3% | 58.7% |
| 3440053 | 603.1.1.146 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TMEM62_C | 0.54 | 39.0 | 2.87e-01 | 80.3% | 60.5% |
| 1820980 | 79.1.1.2 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 | 0.54 | 37.0 | 2.61e-01 | 73.8% | 27.8% |
| 4641081 | 391.1.2.18 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › TILa | 0.53 | 39.0 | 4.14e-01 | 91.8% | 89.1% |
| 3660055 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.53 | 40.0 | 3.32e-01 | 90.2% | 89.5% |
| 3185909 | 394.1.1.2 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_19 | 0.51 | 38.0 | 4.19e-01 | 85.2% | 96.0% |
| 3306545 | 331.2.1.8 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C | 0.51 | 38.0 | 3.53e-01 | 85.2% | 84.7% |
| 4462824 | 2003.1.5.174 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 | 0.51 | 37.0 | 2.38e-01 | 83.6% | 41.1% |