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MK977706.1__QDF19674.1__SEA_DINA_27__00027

Bact-Vir

MK977706.1__QDF19674.1__SEA_DINA_27__00027

Identity

Accession:
MK977706 ↗
Kingdom:
phage

Quality

96.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06114.20 best Peptidase_M78 31.1 2.70e-07 91.2% 50.8%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dteA01 1.10.10.2910 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.86 81.0 6.98e-01 100.0% 75.2%
4kx7A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.77 71.0 4.91e-01 100.0% 41.4%
1pwuA04 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.75 70.0 4.93e-01 100.0% 64.3%
5e3xA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.74 67.0 4.08e-01 100.0% 19.4%
1h19A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.74 53.0 4.94e-01 75.0% 73.2%
3hq2B00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.73 67.0 4.04e-01 100.0% 18.5%
5givB00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.72 66.0 4.01e-01 100.0% 19.0%
4jixB00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.71 64.0 5.82e-01 100.0% 75.0%
4jiuA00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.71 64.0 5.86e-01 100.0% 79.0%
1eb6A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.68 61.0 4.70e-01 100.0% 86.4%
3lmcA00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.65 59.0 4.41e-01 100.0% 85.9%
1tvzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 44.0 3.68e-01 78.8% 59.9%
3ug9A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 42.0 3.02e-01 73.8% 64.4%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.57 42.0 3.31e-01 80.0% 74.3%
4nphA02 1.20.1270.330 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 37.0 3.82e-01 70.0% 85.1%
3vylA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.53 37.0 2.57e-01 73.8% 87.2%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 2.39e-01 73.8% 17.1%
4zi6C01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.51 44.0 3.48e-01 96.2% 67.5%
3kb2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 2.90e-01 75.0% 89.5%
2l82A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 42.0 3.44e-01 96.2% 92.0%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589965 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.93 87.0 7.13e-01 100.0% 63.7%
3949212 2498.1.1.75 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MPTase-PolyVal 0.90 85.0 6.19e-01 100.0% 48.7%
3589463 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.86 82.0 6.34e-01 100.0% 58.1%
4031195 2498.1.1.50 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Zn_peptidase_2 0.86 80.0 6.29e-01 100.0% 65.8%
185182 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.86 81.0 6.94e-01 100.0% 73.9%
4159098 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.86 80.0 6.18e-01 100.0% 50.3%
4536357 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.85 79.0 5.57e-01 100.0% 39.6%
4952523 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.84 79.0 5.40e-01 100.0% 40.8%
4232269 2498.1.1.75 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MPTase-PolyVal 0.84 79.0 6.38e-01 100.0% 61.4%
3953982 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.84 78.0 5.58e-01 100.0% 45.2%
4025675 2498.1.1.62 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.82 76.0 5.60e-01 100.0% 48.2%
5028916 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.82 75.0 5.57e-01 100.0% 56.9%
4033720 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.82 76.0 5.92e-01 100.0% 55.0%
3519421 2498.1.1.62 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.82 76.0 5.81e-01 100.0% 60.0%
4972072 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.81 75.0 5.87e-01 100.0% 73.8%
3877262 2498.1.1.62 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.81 75.0 6.36e-01 100.0% 80.8%
5054592 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.81 74.0 6.59e-01 100.0% 84.5%
3962296 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.80 73.0 5.17e-01 100.0% 40.4%
3954373 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.80 73.0 4.86e-01 100.0% 31.5%
5083216 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.79 73.0 5.50e-01 100.0% 49.4%
3291444 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.79 71.0 5.71e-01 98.8% 82.0%
None 0.78 71.0 5.06e-01 100.0% 40.0%
4937615 2498.1.1.65 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MATCAP 0.78 71.0 4.59e-01 100.0% 29.6%
3286933 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.78 71.0 5.94e-01 100.0% 73.1%
4951424 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.77 72.0 5.25e-01 100.0% 59.5%
3289507 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.77 69.0 5.72e-01 100.0% 84.3%
5045375 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.76 70.0 4.91e-01 100.0% 40.9%
4954380 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.76 69.0 5.27e-01 100.0% 48.3%
5068147 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.75 69.0 4.81e-01 100.0% 41.2%
3969025 2498.1.1.65 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MATCAP 0.75 68.0 4.27e-01 100.0% 25.2%
148675 2498.1.1.34 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › ATLF 0.75 70.0 4.92e-01 100.0% 62.8%
3963382 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.74 63.0 5.04e-01 100.0% 48.7%
4929588 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.74 63.0 4.94e-01 100.0% 45.6%
4458442 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.74 68.0 6.06e-01 100.0% 79.1%
5016438 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.74 64.0 5.15e-01 100.0% 49.7%
5055672 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.73 67.0 6.07e-01 100.0% 86.7%
3983196 2498.1.1.57 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › LPD1 0.73 68.0 4.74e-01 100.0% 66.8%
4960523 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.72 66.0 5.84e-01 100.0% 80.9%
3946602 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.72 65.0 5.67e-01 100.0% 80.8%
5018719 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.72 64.0 4.94e-01 100.0% 45.3%
3970171 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.72 64.0 5.89e-01 100.0% 90.5%
4967994 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.72 63.0 6.04e-01 100.0% 84.4%
3838568 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.71 64.0 5.82e-01 100.0% 74.3%
2771590 2498.1.1.19 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M32 0.71 65.0 3.94e-01 100.0% 19.2%
1030676 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.71 64.0 5.86e-01 100.0% 79.0%
4967466 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.71 65.0 5.88e-01 100.0% 79.0%
3967699 2498.1.1.109 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2300 0.70 66.0 6.18e-01 100.0% 92.6%
4194668 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 64.0 5.85e-01 100.0% 81.0%
4988454 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.70 65.0 5.99e-01 100.0% 81.0%
4983979 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 65.0 5.66e-01 100.0% 75.7%
1030677 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.70 64.0 5.67e-01 100.0% 72.3%
4958679 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 61.0 4.65e-01 100.0% 42.9%
4928093 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.70 62.0 5.61e-01 100.0% 71.8%
5063243 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.69 62.0 5.38e-01 100.0% 65.8%
3281858 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.69 62.0 4.90e-01 100.0% 56.4%
3386105 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.69 62.0 5.25e-01 100.0% 62.3%
5031785 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.69 62.0 5.05e-01 100.0% 55.7%
3957469 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.69 63.0 5.06e-01 100.0% 53.3%
4936590 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.68 61.0 4.92e-01 100.0% 51.6%
1314423 2498.1.1.26 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M56 0.68 62.0 5.56e-01 100.0% 76.1%
3382009 109.4.1.450 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.68 46.0 3.01e-01 70.0% 38.5%
4947544 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.68 60.0 4.95e-01 100.0% 54.5%
5006204 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.68 61.0 4.51e-01 100.0% 39.0%
4954771 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 60.0 4.69e-01 100.0% 54.1%
4942840 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 59.0 5.44e-01 100.0% 81.0%
5059890 2498.1.1.43 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Reprolysin_3 0.65 59.0 4.56e-01 100.0% 81.7%
3110622 2498.1.1.24 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M61 0.64 55.0 3.94e-01 100.0% 37.5%
3923158 2498.1.1.2 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin 0.62 56.0 4.19e-01 100.0% 80.0%
3581494 261.1.1.1 a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.60 47.0 3.53e-01 85.0% 41.5%
5015776 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 40.0 3.04e-01 78.8% 65.6%
None 0.54 37.0 2.78e-01 70.0% 87.7%
3993461 261.1.1.1 a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.54 41.0 2.66e-01 92.5% 17.1%
3874860 611.12.1.1 alpha bundles › N-cbl like › Izumo sperm-egg fusion protein 1 N-terminal domain › Izumo sperm-egg fusion protein 1 N-terminal domain › IZUMO 0.53 38.0 3.12e-01 76.2% 58.0%
3939313 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 38.0 2.72e-01 78.8% 87.3%