←Back to structures
MK977714.1__QDF20248.1__SEA_BRAN_60__00060
Bact-VirMK977714.1__QDF20248.1__SEA_BRAN_60__00060
Identity
- Accession:
- MK977714 ↗
- Kingdom:
- phage
Quality
83.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-50
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 65.0 | 6.25e-01 | 100.0% | 94.6% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.75 | 62.0 | 4.84e-01 | 100.0% | 42.2% |
| 3kd4A02 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.73 | 59.0 | 4.23e-01 | 97.9% | 49.4% |
| 3qvmB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.68 | 50.0 | 3.17e-01 | 97.9% | 14.6% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.66 | 43.0 | 4.19e-01 | 70.8% | 60.0% |
| 3q1pA01 | 6.10.250.1120 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 41.0 | 4.45e-01 | 100.0% | 84.6% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 45.0 | 4.53e-01 | 100.0% | 93.8% |
| 4uzzB00 | 6.10.250.2800 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 44.0 | 4.02e-01 | 81.2% | 78.5% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 39.0 | 3.91e-01 | 70.8% | 68.8% |
| 3nwoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 45.0 | 2.83e-01 | 93.8% | 14.4% |
| 7a0hA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.58 | 46.0 | 3.83e-01 | 97.9% | 50.5% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 45.0 | 3.88e-01 | 89.6% | 52.5% |
| 2c2aA01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.58 | 42.0 | 3.40e-01 | 77.1% | 78.9% |
| 3lxzB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 49.0 | 3.56e-01 | 97.9% | 42.0% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 3.00e-01 | 93.8% | 20.0% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 43.0 | 3.85e-01 | 93.8% | 83.3% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.53 | 42.0 | 3.23e-01 | 97.9% | 90.2% |
| 3n3wA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.52 | 40.0 | 3.03e-01 | 93.8% | 61.1% |
| 2ekgB01 | 6.10.250.3270 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 36.0 | 3.54e-01 | 75.0% | 78.6% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 42.0 | 3.28e-01 | 95.8% | 45.6% |
| 4mtxD00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.51 | 39.0 | 3.12e-01 | 85.4% | 42.1% |
| 2i6xA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 39.0 | 3.68e-01 | 100.0% | 76.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1068638 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.77 | 65.0 | 6.25e-01 | 100.0% | 94.6% |
| 4499345 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 55.0 | 5.48e-01 | 100.0% | 90.0% |
| 5077789 | 101.1.2.948 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27297 | 0.68 | 55.0 | 4.37e-01 | 100.0% | 47.8% |
| 4640918 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.67 | 52.0 | 5.32e-01 | 95.8% | 100.0% |
| 4887646 | 4030.1.1.2 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F-actin_cap_A | 0.64 | 51.0 | 5.01e-01 | 97.9% | 83.9% |
| 4623943 | 3755.3.1.288 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › LMBR1 | 0.62 | 50.0 | 3.47e-01 | 95.8% | 26.9% |
| 3342850 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.62 | 50.0 | 4.49e-01 | 97.9% | 78.7% |
| 3285506 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.59 | 41.0 | 3.30e-01 | 77.1% | 89.5% |
| 5040175 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.57 | 40.0 | 2.99e-01 | 77.1% | 30.4% |
| 3607480 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 45.0 | 3.04e-01 | 97.9% | 21.8% |
| 3519172 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 45.0 | 4.47e-01 | 100.0% | 92.0% |
| 3605285 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.54 | 40.0 | 3.08e-01 | 91.7% | 95.9% |
| 3830756 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.52 | 40.0 | 2.90e-01 | 87.5% | 47.1% |
| 3553813 | 3291.1.1.82 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING | 0.51 | 41.0 | 3.02e-01 | 89.6% | 33.6% |
| 3772767 | 5086.1.1.87 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING | 0.51 | 41.0 | 3.00e-01 | 91.7% | 33.6% |
D2
high
residues 60-126
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ultB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.65 | 46.0 | 2.82e-01 | 74.6% | 53.6% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 45.0 | 3.81e-01 | 80.6% | 83.3% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 45.0 | 3.76e-01 | 80.6% | 82.3% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 43.0 | 3.46e-01 | 85.1% | 82.4% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 3.34e-01 | 80.6% | 79.1% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.53 | 38.0 | 3.35e-01 | 77.6% | 95.2% |
| 1tuhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 3.32e-01 | 85.1% | 80.9% |
| 3bjoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 3.06e-01 | 70.1% | 60.2% |
| 1vajA02 | 3.30.1490.150 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 | 0.50 | 36.0 | 3.54e-01 | 77.6% | 97.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022380 | 3755.3.1.632 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin | 0.57 | 38.0 | 3.03e-01 | 70.1% | 51.4% |
| 4532543 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.57 | 38.0 | 3.03e-01 | 70.1% | 51.4% |
| 3439460 | 10.12.1.101 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 | 0.56 | 40.0 | 2.62e-01 | 79.1% | 16.9% |
| 5066729 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.54 | 38.0 | 3.54e-01 | 76.1% | 60.0% |
| 3788897 | 309.1.1.2 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C | 0.53 | 40.0 | 2.23e-01 | 83.6% | 8.2% |
| 3953277 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.52 | 39.0 | 3.18e-01 | 85.1% | 75.9% |
| 3960457 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 38.0 | 3.11e-01 | 85.1% | 73.5% |
| 3283278 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.51 | 38.0 | 3.21e-01 | 85.1% | 84.4% |