Back to structures

QGH71175.1

Arc-Vir

MK994522__QGH71175.1__X__00019

Identity

Accession:
MK994522 ↗
Protein ID:
QGH71175.1 ↗
Kingdom:
archaea

Quality

89.8 mean pLDDT

Taxonomy

TaxID: 2609788

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-73
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.76 61.0 5.43e-01 100.0% 61.1%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.73 64.0 6.20e-01 97.0% 98.6%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.73 65.0 6.32e-01 98.5% 100.0%
6ethA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.72 66.0 5.90e-01 100.0% 89.9%
1uz5A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.72 65.0 6.30e-01 100.0% 93.1%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.70 63.0 6.00e-01 100.0% 90.9%
1r3fA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.60 39.0 3.95e-01 100.0% 67.7%
5fahA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 43.0 3.67e-01 100.0% 44.4%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 35.0 3.56e-01 100.0% 59.1%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 45.0 4.14e-01 100.0% 63.5%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 35.0 2.61e-01 98.5% 24.1%
3c2qA01 2.40.420.10 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › conserved putative lor/sdh protein from methanococcus maripaludis s2 domain 0.51 37.0 3.48e-01 81.8% 90.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2559744 70.4.1.2 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.85 63.0 6.68e-01 100.0% 88.1%
5002644 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.79 74.0 7.03e-01 100.0% 96.0%
3602933 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.75 64.0 6.52e-01 100.0% 93.8%
5075574 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 67.0 6.29e-01 100.0% 92.5%
5030835 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 67.0 6.11e-01 100.0% 88.2%
4937267 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.74 60.0 4.86e-01 97.0% 48.3%
5033307 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.74 62.0 4.81e-01 100.0% 43.6%
1176867 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.73 66.0 5.89e-01 100.0% 82.4%
3398750 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.72 65.0 6.12e-01 100.0% 95.0%
3516152 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.72 65.0 5.96e-01 100.0% 92.9%
5012061 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.72 64.0 6.35e-01 98.5% 97.1%
3227803 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.71 63.0 6.41e-01 98.5% 100.0%
4988093 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.71 64.0 5.51e-01 100.0% 67.3%
4070519 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.71 63.0 6.11e-01 100.0% 100.0%
3923131 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.71 63.0 5.92e-01 100.0% 98.8%
4933166 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.70 63.0 5.92e-01 100.0% 95.0%
4992744 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.69 61.0 5.65e-01 98.5% 98.8%
3945811 70.4.1.7 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.64 51.0 5.32e-01 98.5% 96.7%
3948218 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.63 45.0 3.07e-01 100.0% 20.4%
3781831 223.2.1.28 a+b three layers › Profilin-like › profilin-like › profilin-like › Afi1 0.58 50.0 3.74e-01 100.0% 59.4%
3407091 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 47.0 3.16e-01 100.0% 23.3%
3287150 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 43.0 3.08e-01 100.0% 27.4%
D2 high residues 75-135
PDB
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.75 67.0 6.19e-01 100.0% 90.9%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.75 69.0 5.91e-01 100.0% 94.6%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.74 67.0 5.73e-01 100.0% 89.5%
1uz5A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.74 66.0 6.24e-01 100.0% 93.1%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.73 63.0 5.95e-01 96.7% 98.6%
6ethA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.73 65.0 5.73e-01 100.0% 89.9%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.71 63.0 6.00e-01 98.4% 100.0%
3ttgA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.60 44.0 2.76e-01 100.0% 14.2%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 41.0 3.51e-01 100.0% 45.7%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.39e-01 83.6% 86.4%
3g8rA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.53 44.0 4.06e-01 95.1% 74.1%
3frnA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.53 45.0 4.37e-01 95.1% 91.2%
1wvoA00 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.52 44.0 4.09e-01 95.1% 74.7%
2wqpA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.51 42.0 4.02e-01 91.8% 78.1%
1ameA00 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.51 43.0 4.23e-01 95.1% 90.9%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2559744 70.4.1.2 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.92 74.0 7.60e-01 100.0% 88.1%
5033307 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.83 76.0 5.70e-01 100.0% 43.6%
5002645 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.83 75.0 7.63e-01 100.0% 100.0%
5049149 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.78 69.0 6.56e-01 100.0% 100.0%
4975521 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.77 69.0 6.18e-01 100.0% 90.6%
5025023 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.77 68.0 6.40e-01 100.0% 93.3%
3959516 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.77 68.0 6.41e-01 100.0% 96.0%
4930449 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.76 67.0 6.29e-01 98.4% 96.0%
5083817 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.76 69.0 6.72e-01 96.7% 98.5%
4990371 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.76 69.0 6.63e-01 100.0% 97.1%
5075574 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.76 67.0 6.14e-01 100.0% 92.5%
5025019 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.76 67.0 6.06e-01 100.0% 88.1%
5030835 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.75 67.0 5.99e-01 100.0% 88.2%
4983299 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.75 66.0 5.96e-01 100.0% 85.9%
4975116 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.75 66.0 6.07e-01 100.0% 92.5%
4991571 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.75 66.0 6.06e-01 100.0% 92.5%
4602455 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 65.0 6.19e-01 100.0% 97.3%
3398750 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 66.0 6.07e-01 100.0% 95.0%
1176847 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 66.0 6.12e-01 100.0% 90.9%
2640772 70.4.1.1 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.74 69.0 5.73e-01 100.0% 88.0%
3686775 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 66.0 5.91e-01 100.0% 94.1%
3603211 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 65.0 6.00e-01 100.0% 91.3%
1176867 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 65.0 5.75e-01 100.0% 82.4%
5049869 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 66.0 6.02e-01 100.0% 93.8%
3970970 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 64.0 6.07e-01 100.0% 93.3%
4070519 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.74 65.0 6.13e-01 100.0% 100.0%
5083816 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.74 67.0 6.38e-01 100.0% 92.9%
4933166 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.73 65.0 5.96e-01 100.0% 95.0%
5012061 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.73 64.0 6.21e-01 98.4% 97.1%
3290354 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.73 65.0 5.81e-01 100.0% 98.8%
4956897 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.73 64.0 5.90e-01 100.0% 93.8%
4992744 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.73 63.0 5.71e-01 98.4% 98.8%
4935036 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.73 63.0 6.03e-01 100.0% 94.5%
4617493 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.73 65.0 5.95e-01 100.0% 92.5%
2389830 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.72 65.0 5.65e-01 100.0% 87.9%
3602933 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.72 65.0 6.37e-01 100.0% 93.8%
3283905 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.71 61.0 5.95e-01 98.4% 97.1%
3513462 70.4.1.8 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.71 61.0 6.23e-01 100.0% 96.7%
5061609 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.70 50.0 5.41e-01 75.4% 100.0%
3945811 70.4.1.7 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.70 61.0 6.16e-01 98.4% 96.7%
5017350 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.70 61.0 5.87e-01 100.0% 95.7%
5016905 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.70 61.0 5.93e-01 100.0% 98.5%
5022501 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.69 61.0 5.84e-01 100.0% 91.4%
3822534 1.1.8.18 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C 0.62 54.0 3.83e-01 100.0% 52.6%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 39.0 3.22e-01 80.3% 69.2%
5078504 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.53 45.0 4.41e-01 95.1% 89.2%
1086826 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.53 44.0 4.35e-01 95.1% 89.6%
159366 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.52 44.0 4.09e-01 95.1% 74.7%
3587047 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.52 43.0 4.07e-01 91.8% 75.7%
224541 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.51 42.0 4.11e-01 91.8% 83.8%
4159528 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.51 43.0 4.14e-01 93.4% 81.4%
3392605 2492.1.1.49 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26560 0.51 42.0 3.45e-01 100.0% 85.4%
3972515 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.51 41.0 4.19e-01 90.2% 95.0%
4268048 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.51 43.0 4.24e-01 95.1% 92.3%
4409168 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.51 42.0 4.03e-01 91.8% 81.4%