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QGH71196.1

Arc-Vir

MK994522__QGH71196.1__X__00040

Identity

Accession:
MK994522 ↗
Protein ID:
QGH71196.1 ↗
Kingdom:
archaea

Quality

96.0 mean pLDDT

Taxonomy

Methanobacterium_virus_PhiF1

TaxID: 2609788

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-125
PDB
Domain cluster: rep: ON615601.1__UTS51982.1__X__00034__D5-121
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23140.2 best Gp80 27.7 4.30e-06 98.4% 78.1%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 42.0 4.12e-01 81.1% 70.2%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 29.0 3.05e-01 100.0% 49.6%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.55 48.0 3.59e-01 95.1% 86.7%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 4.31e-01 91.0% 95.1%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 46.0 3.56e-01 95.1% 78.9%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 23.0 3.06e-01 80.3% 78.9%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 32.0 2.93e-01 81.1% 46.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928608 3899.1.1.0 ↗ beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 0.92 84.0 7.56e-01 100.0% 73.0%
4932865 3899.1.1.0 ↗ beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 0.90 86.0 8.16e-01 100.0% 88.6%
4385045 11.1.1.987 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30412 0.62 40.0 4.24e-01 76.2% 71.8%
3234632 389.1.2.9 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › C6 0.62 35.0 3.95e-01 82.8% 73.3%
3407013 11.1.1.647 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GAE_BBS1 0.60 39.0 3.90e-01 80.3% 63.2%
3230589 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 36.0 3.00e-01 83.6% 32.7%
3250889 11.1.1.44 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.59 38.0 3.92e-01 81.1% 67.8%
3943581 881.4.1.1 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.59 26.0 2.81e-01 100.0% 46.4%
4276998 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.55 47.0 3.66e-01 92.6% 80.0%
2996025 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.54 39.0 3.71e-01 82.0% 63.6%
4944012 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 41.0 4.32e-01 82.8% 96.4%
4962625 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 45.0 4.22e-01 94.3% 87.3%
3785886 1.1.5.18 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.52 46.0 3.89e-01 97.5% 82.4%