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MN013079.1__QEG12531.1__gp81__00081

Bact-Vir

MN013079.1__QEG12531.1__gp81__00081

Identity

Accession:
MN013079 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Webervirus› Klebsiella_phage_vB_KpnS_Call

TaxID: 2591371

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-41
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.76 55.0 4.47e-01 100.0% 41.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.74 56.0 4.68e-01 100.0% 46.1%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.71 53.0 4.47e-01 100.0% 46.1%
1qgwA00 3.90.510.10 Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain 0.68 47.0 3.88e-01 75.0% 56.6%
4lm6A00 3.90.510.10 Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain 0.65 48.0 4.20e-01 82.5% 67.7%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 45.0 3.66e-01 97.5% 85.9%
1qf6A02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.56 38.0 2.82e-01 70.0% 88.7%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.55 37.0 3.07e-01 72.5% 35.2%
2w82A01 3.10.20.480 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Antirestriction protein ArdA, domain 1 0.55 37.0 3.35e-01 100.0% 47.5%
1ameA00 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.54 37.0 3.27e-01 87.5% 45.5%
2jr1A01 3.30.160.510 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Histone-like nucleoid-structuring protein H-NS 0.54 36.0 3.14e-01 100.0% 43.8%
2qndA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 42.0 3.56e-01 97.5% 88.7%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.52 41.0 3.08e-01 97.5% 38.2%
1vb3A01 3.90.1380.10 Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain 0.51 37.0 3.15e-01 87.5% 76.5%
5azsA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 34.0 2.91e-01 70.0% 38.6%
1m0sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 42.0 3.59e-01 97.5% 90.3%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 38.0 2.97e-01 87.5% 71.4%
2dr1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 42.0 2.94e-01 97.5% 77.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024798 898.1.1.0 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 0.68 57.0 3.92e-01 100.0% 59.3%
3692942 221.1.1.44 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.67 49.0 4.02e-01 100.0% 41.2%
3580612 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.63 42.0 2.86e-01 75.0% 18.1%
3781061 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 48.0 4.03e-01 100.0% 45.9%
3505737 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.60 49.0 3.88e-01 100.0% 53.7%
3487996 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.60 48.0 4.40e-01 100.0% 67.8%
3405253 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.59 48.0 4.06e-01 100.0% 54.7%
3508135 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.59 50.0 4.04e-01 100.0% 60.0%
3491126 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.58 42.0 2.54e-01 82.5% 11.8%
3569682 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.57 44.0 3.41e-01 100.0% 53.0%
3577511 11.1.5.18 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CP2 0.57 39.0 2.73e-01 72.5% 32.1%
3788812 304.114.1.6 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNA_pol_B_exo1 0.56 45.0 2.86e-01 95.0% 48.3%
3646126 221.1.1.189 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF31065 0.56 43.0 3.44e-01 92.5% 73.7%
4938040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 2.89e-01 97.5% 27.3%
3398023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 33.0 2.26e-01 100.0% 13.1%
5049254 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 38.0 2.76e-01 92.5% 86.9%