←Back to structures

MN013082.1__QEG12935.1__SIB_34__00034

Bact-Vir

MN013082.1__QEG12935.1__SIB_34__00034

Identity

Accession:
MN013082 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Ningirsuvirus› Klebsiella_phage_vB_KpnP_Sibilus

TaxID: 2591368

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-60
PDB
Domain cluster: representative
D2 high residues 80-137
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 4.86e-01 81.0% 78.6%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.64 46.0 3.43e-01 79.3% 47.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.43e-01 87.9% 67.9%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 3.54e-01 84.5% 76.4%
2mmpA00 3.30.160.830 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 43.0 3.97e-01 75.9% 59.7%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 40.0 2.77e-01 70.7% 20.3%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 37.0 3.08e-01 100.0% 38.2%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.57 42.0 2.82e-01 84.5% 66.5%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.36e-01 79.3% 94.4%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.20e-01 79.3% 90.6%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 38.0 3.03e-01 74.1% 36.8%
5azsA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 38.0 3.41e-01 72.4% 79.5%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 3.44e-01 79.3% 91.8%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.11e-01 89.7% 76.0%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.68e-01 94.8% 70.9%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 42.0 4.22e-01 94.8% 85.2%
2fujA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 38.0 3.14e-01 75.9% 92.4%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.28e-01 74.1% 81.3%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 2.84e-01 77.6% 30.3%
5dvyA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.54 39.0 3.09e-01 79.3% 81.0%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 38.0 2.30e-01 77.6% 23.8%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 3.15e-01 82.8% 100.0%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 44.0 3.67e-01 94.8% 80.2%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 38.0 3.04e-01 75.9% 90.8%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.53 38.0 3.17e-01 81.0% 48.8%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.16e-01 79.3% 84.4%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.52 37.0 3.22e-01 75.9% 56.7%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 36.0 3.27e-01 74.1% 75.0%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 2.98e-01 81.0% 76.2%
2egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.09e-01 84.5% 100.0%
4jlxA02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.51 34.0 2.53e-01 70.7% 70.8%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.51 40.0 2.68e-01 98.3% 94.6%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.51 36.0 3.01e-01 77.6% 95.5%
4ogcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 36.0 2.65e-01 81.0% 58.0%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.50 36.0 2.41e-01 79.3% 60.4%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 2.85e-01 79.3% 84.1%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 5.81e-01 84.5% 90.8%
4655719 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 59.0 5.07e-01 84.5% 68.9%
4961138 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 56.0 5.17e-01 86.2% 72.0%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 56.0 4.87e-01 84.5% 97.6%
3890362 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 4.76e-01 75.9% 84.3%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 55.0 5.36e-01 91.4% 76.9%
3729666 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 4.60e-01 91.4% 53.6%
3182025 4.1.1.475 ↗ beta barrels › SH3 › SH3 › SH3 › PF26640 0.68 53.0 4.16e-01 89.7% 50.4%
4555816 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 53.0 4.75e-01 89.7% 70.6%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 54.0 4.94e-01 87.9% 73.3%
3729690 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.66 54.0 4.57e-01 89.7% 84.2%
3701010 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.65 48.0 3.04e-01 79.3% 23.9%
3306580 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.82e-01 82.8% 100.0%
3592075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.87e-01 98.3% 84.7%
3749631 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.63 49.0 4.05e-01 91.4% 47.6%
3712672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.64e-01 91.4% 95.0%
4990538 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 3.77e-01 86.2% 93.5%
3317821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.31e-01 82.8% 86.7%
4972821 523.1.1.3 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.61 44.0 3.51e-01 77.6% 50.0%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 46.0 4.44e-01 91.4% 85.7%
4529819 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.58 44.0 3.52e-01 87.9% 90.4%
2396496 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.57 40.0 3.29e-01 74.1% 94.5%
1810786 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.56 40.0 3.70e-01 75.9% 62.2%
3510139 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.56 44.0 3.08e-01 87.9% 50.8%
3635097 206.1.2.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.55 40.0 2.55e-01 77.6% 29.7%
5040414 11.1.1.1443 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 0.55 39.0 3.29e-01 75.9% 61.0%
3515504 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.55 37.0 3.71e-01 84.5% 69.5%
4241432 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 42.0 3.35e-01 86.2% 56.0%
3847699 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.54 41.0 2.71e-01 86.2% 38.3%
3798461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.50e-01 93.1% 65.8%
4137471 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 39.0 3.28e-01 81.0% 63.6%
3563416 5095.1.1.0 ↗ beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen 0.54 38.0 3.72e-01 77.6% 93.8%
3998992 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.53 44.0 3.44e-01 96.6% 88.9%
3707978 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.53 38.0 2.72e-01 79.3% 73.3%
3486056 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 2.80e-01 75.9% 33.8%
3591052 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.94e-01 89.7% 76.9%
4569359 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 39.0 3.46e-01 81.0% 95.3%
4185827 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 38.0 3.21e-01 81.0% 63.6%
3650660 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 37.0 2.84e-01 75.9% 44.0%
None — 0.52 40.0 2.48e-01 91.4% 38.4%
3997968 5.1.5.128 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NUP159_NUP214 0.51 36.0 2.43e-01 79.3% 31.8%
3607863 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 34.0 3.06e-01 72.4% 53.7%
3924608 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.51 35.0 2.29e-01 74.1% 59.7%
3238384 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 35.0 2.49e-01 74.1% 30.3%