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MN013086.1__QEG04416.1__CHRON_18__00018
Bact-VirMN013086.1__QEG04416.1__CHRON_18__00018
Identity
- Accession:
- MN013086 ↗
- Kingdom:
- phage
Quality
90.9
mean pLDDT
Taxonomy
TaxID: 3427938
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-115
Domain cluster:
rep: MN604230.1__QGF21724.1__Sam112_gp20__00020__D22-108
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4da2A01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.79 | 54.0 | 5.57e-01 | 100.0% | 74.7% |
| 2dgyA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 55.0 | 5.71e-01 | 100.0% | 78.5% |
| 1t9hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 52.0 | 5.52e-01 | 100.0% | 84.9% |
| 2id0A02 | 2.40.50.640 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.71 | 51.0 | 5.44e-01 | 100.0% | 87.7% |
| 1khiA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 51.0 | 5.51e-01 | 100.0% | 90.3% |
| 1ixrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 47.0 | 5.28e-01 | 100.0% | 95.2% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 46.0 | 5.10e-01 | 100.0% | 90.6% |
| 3kf8B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 53.0 | 4.68e-01 | 100.0% | 58.3% |
| 7zhhA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 48.0 | 5.35e-01 | 100.0% | 98.5% |
| 1ty0A02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 50.0 | 5.22e-01 | 100.0% | 92.0% |
| 2ahoB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 48.0 | 4.90e-01 | 100.0% | 82.5% |
| 1bvsA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 45.0 | 4.90e-01 | 100.0% | 95.4% |
| 2ja9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 53.0 | 5.39e-01 | 100.0% | 92.8% |
| 1wi5A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 48.0 | 5.04e-01 | 98.8% | 92.0% |
| 3nswA00 | 2.40.50.780 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 46.0 | 4.31e-01 | 100.0% | 63.2% |
| 2vl6A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 51.0 | 4.70e-01 | 100.0% | 94.6% |
| 2iciA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 44.0 | 4.58e-01 | 100.0% | 92.3% |
| 6ro0D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 50.0 | 4.58e-01 | 100.0% | 85.5% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 50.0 | 4.65e-01 | 100.0% | 82.7% |
| 4pofA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 49.0 | 4.57e-01 | 100.0% | 94.2% |
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 33.0 | 3.63e-01 | 100.0% | 82.3% |
| 3c8iA00 | 2.40.410.10 | Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily | 0.51 | 44.0 | 3.91e-01 | 100.0% | 64.6% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4119295 | 2.1.1.83 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N | 0.77 | 59.0 | 5.93e-01 | 100.0% | 80.0% |
| 3231154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 36.0 | 3.72e-01 | 100.0% | 47.5% |
| 4000393 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 51.0 | 4.70e-01 | 100.0% | 55.2% |
| 3594041 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 51.0 | 5.71e-01 | 100.0% | 90.8% |
| 4067858 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 52.0 | 5.62e-01 | 100.0% | 91.4% |
| 3591052 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 50.0 | 5.61e-01 | 98.8% | 100.0% |
| 3977606 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 50.0 | 4.76e-01 | 98.8% | 67.0% |
| 3513289 | 2.1.1.63 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_2 | 0.66 | 43.0 | 4.74e-01 | 100.0% | 86.2% |
| 4630654 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 49.0 | 5.17e-01 | 100.0% | 88.0% |
| 3934825 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 47.0 | 4.27e-01 | 100.0% | 56.5% |
| 4978231 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 53.0 | 4.66e-01 | 100.0% | 62.4% |
| 5042801 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 53.0 | 4.60e-01 | 100.0% | 60.8% |
| 4999913 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 53.0 | 4.65e-01 | 100.0% | 63.2% |
| 4952879 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.62 | 51.0 | 4.66e-01 | 100.0% | 69.1% |
| 3623874 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.62 | 54.0 | 4.64e-01 | 100.0% | 60.7% |
| 3494172 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.61 | 55.0 | 4.44e-01 | 100.0% | 55.6% |
| 2831772 | 2.1.1.65 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 | 0.60 | 55.0 | 4.94e-01 | 100.0% | 93.9% |
| 3656603 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.59 | 50.0 | 4.54e-01 | 100.0% | 68.7% |
| 3255112 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.59 | 52.0 | 4.72e-01 | 100.0% | 78.3% |
| 5035945 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.58 | 51.0 | 4.66e-01 | 100.0% | 72.2% |
| 3471170 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 51.0 | 4.55e-01 | 100.0% | 93.6% |
| 3281927 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.58 | 53.0 | 4.64e-01 | 100.0% | 94.4% |
| 3244059 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.58 | 51.0 | 4.80e-01 | 100.0% | 90.5% |
| 4309330 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.58 | 51.0 | 4.66e-01 | 100.0% | 90.4% |
| 4252610 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 53.0 | 5.17e-01 | 100.0% | 93.3% |
| 4024838 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.58 | 51.0 | 4.71e-01 | 100.0% | 90.0% |
| 3409288 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.58 | 51.0 | 4.70e-01 | 100.0% | 92.7% |
| 5082734 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 51.0 | 4.56e-01 | 100.0% | 70.0% |
| 4941242 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.57 | 50.0 | 4.65e-01 | 100.0% | 76.4% |
| 5030363 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.57 | 50.0 | 4.66e-01 | 100.0% | 77.3% |
| 3650641 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.57 | 50.0 | 4.33e-01 | 100.0% | 66.7% |
| 3788866 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.57 | 50.0 | 4.28e-01 | 100.0% | 64.3% |
| 5052151 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.57 | 50.0 | 4.56e-01 | 100.0% | 73.9% |
| 3594029 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 50.0 | 4.70e-01 | 100.0% | 80.0% |
| 5011190 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.56 | 50.0 | 4.46e-01 | 100.0% | 83.3% |
| 4022913 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 50.0 | 4.53e-01 | 100.0% | 85.2% |
| 3806487 | 2.1.1.23 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 | 0.56 | 48.0 | 4.07e-01 | 100.0% | 55.9% |
| 4002116 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 45.0 | 3.87e-01 | 100.0% | 52.4% |
| 5026916 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.56 | 50.0 | 4.57e-01 | 100.0% | 90.0% |
| 163857 | 2.2.1.1 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Stap_Strp_toxin | 0.56 | 43.0 | 4.22e-01 | 100.0% | 76.6% |
| 4876256 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.56 | 41.0 | 4.21e-01 | 100.0% | 82.3% |
| 5060038 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.55 | 48.0 | 4.42e-01 | 100.0% | 84.3% |
| 4979630 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 49.0 | 4.45e-01 | 100.0% | 77.4% |
| 3610888 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 47.0 | 4.13e-01 | 100.0% | 76.2% |
| 5011566 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 46.0 | 3.93e-01 | 100.0% | 62.1% |
| 3498900 | 2.3.1.0 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like | 0.53 | 45.0 | 3.64e-01 | 100.0% | 49.1% |
| 4054539 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.53 | 37.0 | 3.86e-01 | 100.0% | 78.8% |
| 3056918 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 39.0 | 4.00e-01 | 100.0% | 83.7% |
| 4429352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 41.0 | 4.01e-01 | 83.3% | 92.2% |
D2
medium
residues 137-181
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rh0A01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 38.0 | 3.49e-01 | 97.8% | 51.6% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 3.27e-01 | 91.1% | 77.1% |
| 3afcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 39.0 | 2.34e-01 | 93.3% | 44.0% |
| 3ecqA01 | 2.60.120.870 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 39.0 | 2.84e-01 | 95.6% | 94.0% |
| 3kz5E00 | 6.10.140.1550 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 40.0 | 4.00e-01 | 100.0% | 85.4% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.51 | 41.0 | 3.46e-01 | 93.3% | 80.5% |
| 2m6nA00 | 2.20.25.20 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 37.0 | 3.68e-01 | 88.9% | 78.3% |
| 3ak5D02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 41.0 | 2.33e-01 | 100.0% | 20.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559748 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.94 | 86.0 | 5.65e-01 | 100.0% | 27.5% |
| 3970340 | 2.7.1.4 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › DUF6484 | 0.85 | 68.0 | 4.75e-01 | 93.3% | 30.2% |
| 4319423 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.84 | 58.0 | 5.91e-01 | 71.1% | 74.4% |
| 1713454 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.70 | 64.0 | 4.74e-01 | 100.0% | 44.4% |
| 4223833 | 79.1.1.13 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_trimer_C | 0.69 | 63.0 | 4.18e-01 | 100.0% | 30.0% |
| 3970534 | 79.1.1.17 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF2345 | 0.68 | 60.0 | 4.34e-01 | 100.0% | 42.4% |
| 4374595 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.66 | 60.0 | 5.12e-01 | 100.0% | 72.9% |
| None | — | 0.66 | 59.0 | 3.65e-01 | 100.0% | 20.2% | |
| 4033196 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.62 | 46.0 | 3.32e-01 | 82.2% | 96.4% |
| 5032559 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 41.0 | 3.22e-01 | 80.0% | 54.4% |
| 5052130 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.55 | 42.0 | 2.50e-01 | 88.9% | 34.9% |
| 4962784 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 39.0 | 2.76e-01 | 91.1% | 22.4% |
| 3535997 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.53 | 39.0 | 2.78e-01 | 86.7% | 64.8% |
| 3692631 | 319.1.1.14 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 | 0.52 | 39.0 | 2.97e-01 | 84.4% | 70.9% |
| 4669167 | 2003.1.5.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT | 0.50 | 41.0 | 2.75e-01 | 100.0% | 31.2% |