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MN013089.1__QEG13680.1__MARVELLAND_158__00140

Bact-Vir

MN013089.1__QEG13680.1__MARVELLAND_158__00140

Identity

Accession:
MN013089 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-52
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 60.0 5.05e-01 97.9% 59.8%
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.71 55.0 4.52e-01 91.7% 45.2%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 50.0 3.45e-01 89.6% 22.5%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.69 57.0 4.41e-01 97.9% 47.8%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 51.0 4.09e-01 91.7% 41.5%
4h4kA01 3.30.70.2940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 54.0 4.50e-01 93.8% 50.6%
2xzmP00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 51.0 3.70e-01 91.7% 28.4%
1ywxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.66 50.0 4.24e-01 95.8% 46.7%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.66 53.0 3.95e-01 100.0% 47.9%
3drxB03 3.30.70.2000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 4.39e-01 89.6% 68.6%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 45.0 3.73e-01 87.5% 38.7%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.64 55.0 3.91e-01 100.0% 42.5%
5optY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 52.0 3.96e-01 95.8% 36.6%
1vq8R00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.64 56.0 3.95e-01 100.0% 43.3%
4r78A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 54.0 4.37e-01 97.9% 95.8%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.63 48.0 4.45e-01 89.6% 69.7%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 47.0 3.82e-01 89.6% 40.0%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 51.0 3.77e-01 93.8% 83.7%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 44.0 3.15e-01 81.2% 24.7%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 47.0 3.88e-01 91.7% 44.4%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 43.0 3.53e-01 87.5% 40.7%
3iwcB00 3.30.360.110 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain 0.60 44.0 4.13e-01 95.8% 63.9%
2qdfA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 46.0 3.99e-01 89.6% 58.4%
3pfeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 45.0 3.36e-01 87.5% 49.2%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 46.0 3.58e-01 100.0% 77.8%
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 40.0 2.89e-01 87.5% 22.8%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.56 50.0 3.96e-01 100.0% 77.6%
4jneA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.56 47.0 3.93e-01 97.9% 65.9%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.55 46.0 3.65e-01 97.9% 48.6%
1z2zA02 3.30.70.3160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.42e-01 95.8% 45.6%
1in0A02 3.30.70.990 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YajQ-like, domain 2 0.54 47.0 3.74e-01 100.0% 50.0%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.54 40.0 3.91e-01 97.9% 75.0%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.52 46.0 3.71e-01 100.0% 83.0%
3hp7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.80e-01 97.9% 86.2%
2f2uB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 2.79e-01 89.6% 87.0%
1m5sA01 3.30.70.520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 45.0 3.16e-01 97.9% 82.1%
6cz4A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 3.17e-01 97.9% 45.3%
1ewiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 3.27e-01 100.0% 78.1%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3906596 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 67.0 4.61e-01 100.0% 37.1%
4946197 2003.1.5.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 0.77 54.0 3.58e-01 75.0% 34.6%
5019886 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.76 58.0 5.12e-01 89.6% 56.0%
3660324 221.4.1.28 a+b two layers › beta-Grasp › Nudix › Nudix › DUF7915 0.76 61.0 4.39e-01 93.8% 33.1%
3506556 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.73 57.0 5.68e-01 89.6% 96.0%
3609518 101.1.1.491 alpha arrays › HTH › HTH › Three-helical HTH › FAZ1_cons 0.71 60.0 4.80e-01 100.0% 47.0%
5049809 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.71 55.0 4.52e-01 97.9% 45.3%
5073608 304.16.1.0 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like 0.71 54.0 4.40e-01 97.9% 45.5%
4028577 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.70 60.0 4.31e-01 97.9% 33.8%
5026971 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.70 51.0 4.26e-01 95.8% 44.7%
5039693 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.70 51.0 4.20e-01 95.8% 42.7%
5062146 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.70 51.0 4.27e-01 95.8% 45.2%
4948334 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.69 50.0 4.16e-01 95.8% 43.2%
4458779 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.69 50.0 4.07e-01 95.8% 40.4%
4634052 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.69 50.0 4.15e-01 95.8% 43.2%
5081005 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.68 49.0 4.17e-01 95.8% 45.8%
3486397 304.16.1.0 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like 0.67 49.0 4.03e-01 95.8% 42.7%
4968748 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.67 52.0 4.27e-01 97.9% 45.3%
3670792 243.3.1.67 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C 0.67 54.0 5.02e-01 95.8% 80.0%
4975698 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.67 50.0 4.10e-01 95.8% 43.3%
3462235 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.67 54.0 4.77e-01 97.9% 65.0%
4314849 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.66 49.0 4.10e-01 95.8% 45.9%
3270398 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.66 48.0 3.96e-01 95.8% 42.7%
4047960 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.66 48.0 4.04e-01 95.8% 45.9%
4959439 243.3.1.80 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF30787 0.65 52.0 4.62e-01 97.9% 80.0%
3824140 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 50.0 4.02e-01 91.7% 68.2%
4624802 7501.1.1.1 a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 0.65 48.0 3.35e-01 81.2% 93.3%
2589713 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.65 52.0 3.84e-01 97.9% 34.4%
3969252 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.64 53.0 3.99e-01 100.0% 43.0%
3650594 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.64 52.0 3.53e-01 100.0% 24.4%
4891938 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.64 50.0 3.03e-01 100.0% 12.5%
3512337 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.63 54.0 4.81e-01 97.9% 70.0%
4074127 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.62 44.0 2.97e-01 81.2% 17.7%
2966850 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 44.0 3.07e-01 93.8% 20.3%
3580652 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 48.0 3.05e-01 100.0% 16.7%
3490305 6111.1.1.1 a+b complex topology › C-terminal domain of cytoplasmic dynein heavy chain › C-terminal domain of cytoplasmic dynein heavy chain › C-terminal domain of cytoplasmic dynein heavy chain › Dynein_C 0.60 51.0 3.11e-01 100.0% 27.0%
3488490 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 50.0 3.95e-01 95.8% 65.7%
3707333 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 47.0 3.05e-01 100.0% 17.2%
3652178 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.60 43.0 3.01e-01 77.1% 29.4%
3514965 872.8.1.1 a+b two layers › Dodecin subunit-like › Probable RNA-binding protein N-terminal domain › Probable RNA-binding protein N-terminal domain › Jag_N 0.60 45.0 4.43e-01 89.6% 83.6%
3491281 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.59 50.0 3.50e-01 100.0% 27.9%
3246486 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.59 48.0 3.10e-01 89.6% 71.1%
3473115 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.59 49.0 4.57e-01 100.0% 83.1%
4940810 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 42.0 4.00e-01 95.8% 61.9%
3206928 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 46.0 2.82e-01 100.0% 13.3%
4957302 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 44.0 3.82e-01 95.8% 61.1%
3893883 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.57 44.0 2.80e-01 100.0% 14.4%
4878600 327.13.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.56 46.0 3.48e-01 100.0% 71.2%
4014196 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 49.0 2.84e-01 100.0% 38.3%
4930275 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.56 49.0 3.99e-01 100.0% 60.0%
5078624 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.55 49.0 3.84e-01 100.0% 49.5%
3755026 206.1.1.51 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PIP49_C 0.55 44.0 3.01e-01 100.0% 22.9%
5001386 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 39.0 3.34e-01 81.2% 47.1%
4072180 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.53 46.0 3.56e-01 100.0% 45.0%
4002369 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.53 41.0 3.58e-01 97.9% 54.4%
4933378 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.52 46.0 3.59e-01 100.0% 54.3%
4637248 304.17.1.1 a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG 0.51 42.0 3.16e-01 91.7% 59.2%
4107632 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.51 37.0 3.18e-01 83.3% 47.8%
5000735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 46.0 3.09e-01 100.0% 57.1%