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MN013089.1__QEG13703.1__MARVELLAND_181__00163

Bact-Vir

MN013089.1__QEG13703.1__MARVELLAND_181__00163

Identity

Accession:
MN013089 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-61
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.78 61.0 6.26e-01 85.2% 100.0%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.77 66.0 5.12e-01 100.0% 43.5%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 54.0 5.84e-01 88.5% 100.0%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.74 63.0 4.80e-01 96.7% 41.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 56.0 5.26e-01 95.1% 67.9%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.69 60.0 5.05e-01 98.4% 57.4%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.69 60.0 5.04e-01 100.0% 70.4%
4pg4A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.69 55.0 4.06e-01 88.5% 91.9%
1oheA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.67 58.0 4.41e-01 98.4% 69.8%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.67 56.0 4.95e-01 100.0% 61.9%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 54.0 5.27e-01 96.7% 86.1%
3rrcB01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.66 57.0 4.28e-01 100.0% 57.0%
4evqA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 56.0 3.99e-01 100.0% 74.8%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.66 48.0 3.82e-01 78.7% 44.8%
4gnrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 55.0 3.95e-01 100.0% 76.1%
4l22A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.65 54.0 3.29e-01 95.1% 13.9%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 56.0 4.39e-01 98.4% 74.4%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 54.0 4.13e-01 93.4% 87.5%
2i6jA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 56.0 4.16e-01 98.4% 70.8%
4ki9A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 55.0 4.18e-01 100.0% 58.0%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 53.0 4.11e-01 98.4% 40.3%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.64 54.0 5.02e-01 96.7% 82.1%
1yn9B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 53.0 3.90e-01 93.4% 97.6%
2g6zA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 53.0 4.11e-01 98.4% 58.5%
1zzwA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 53.0 4.06e-01 98.4% 58.5%
2nt2A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 53.0 4.16e-01 100.0% 62.0%
2r0bA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 52.0 4.02e-01 100.0% 74.8%
4gytA00 1.20.120.740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 0.62 52.0 3.87e-01 100.0% 40.1%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.62 42.0 3.68e-01 72.1% 47.4%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.61 50.0 4.73e-01 95.1% 77.9%
4bvxA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 50.0 4.23e-01 91.8% 72.4%
3q23A04 6.10.140.1370 Special › Helix non-globular › Helix Hairpins › 0.61 52.0 4.61e-01 100.0% 65.9%
1bi0A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.60 45.0 4.41e-01 80.3% 84.8%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.60 50.0 4.46e-01 93.4% 70.5%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.59 40.0 3.75e-01 75.4% 56.6%
3vhlA02 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.58 47.0 3.83e-01 91.8% 68.3%
1z9eA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.57 44.0 3.98e-01 83.6% 67.5%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.57 50.0 4.27e-01 98.4% 66.7%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.56 43.0 4.20e-01 82.0% 87.9%
3l9tA01 1.10.1240.70 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.56 43.0 3.94e-01 95.1% 62.7%
5b1aH00 1.10.10.140 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cytochrome c oxidase, subunit VIb 0.56 46.0 4.30e-01 96.7% 73.4%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 3.66e-01 100.0% 94.2%
2fdrA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 44.0 4.30e-01 86.9% 82.1%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 39.0 4.12e-01 78.7% 81.8%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 39.0 3.86e-01 90.2% 70.8%
2yw6B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 45.0 3.48e-01 96.7% 52.7%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 37.0 3.77e-01 83.6% 75.4%
5ja4D00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.52 42.0 3.22e-01 90.2% 63.8%
4emeA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 46.0 2.85e-01 100.0% 53.7%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.51 38.0 3.89e-01 86.9% 94.7%
3l5kA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 39.0 3.84e-01 95.1% 80.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997589 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.86 70.0 5.34e-01 90.2% 40.0%
5032388 195.1.1.0 alpha complex topology › NusB-like › NusB-like › NusB-like 0.83 72.0 5.44e-01 95.1% 41.4%
4972252 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.82 71.0 5.36e-01 96.7% 41.4%
4600685 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.82 70.0 5.33e-01 96.7% 41.4%
3282500 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.82 70.0 4.36e-01 93.4% 59.7%
5076317 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.80 68.0 5.32e-01 95.1% 45.4%
4983924 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.79 66.0 4.32e-01 91.8% 70.6%
5051149 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.79 67.0 4.20e-01 93.4% 55.2%
3580853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 66.0 6.52e-01 93.4% 93.8%
3838750 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.79 68.0 5.13e-01 96.7% 41.4%
5042310 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.78 64.0 4.97e-01 96.7% 41.5%
4258338 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.78 64.0 5.30e-01 96.7% 50.9%
3248091 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.78 67.0 6.02e-01 96.7% 76.5%
4397294 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.77 66.0 5.07e-01 100.0% 41.4%
4983508 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 55.0 5.32e-01 86.9% 67.1%
3965372 195.1.1.0 alpha complex topology › NusB-like › NusB-like › NusB-like 0.77 65.0 5.21e-01 95.1% 100.0%
4302432 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.77 64.0 3.98e-01 91.8% 54.8%
3261605 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.77 65.0 5.99e-01 96.7% 85.0%
5022243 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.76 61.0 4.61e-01 88.5% 37.2%
3927802 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.76 65.0 5.99e-01 96.7% 82.5%
4569734 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.75 61.0 4.84e-01 95.1% 43.1%
3993576 610.3.1.3 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 0.75 61.0 4.50e-01 91.8% 37.6%
4434935 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.74 65.0 5.01e-01 100.0% 43.6%
3991717 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.74 64.0 5.13e-01 100.0% 89.6%
167064 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.74 64.0 4.85e-01 100.0% 40.5%
4936137 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.74 59.0 5.88e-01 91.8% 86.2%
3528233 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 5.91e-01 100.0% 85.3%
5005264 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 57.0 4.19e-01 95.1% 32.7%
5034762 195.1.1.0 alpha complex topology › NusB-like › NusB-like › NusB-like 0.72 61.0 4.84e-01 100.0% 89.6%
4932388 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.71 59.0 5.62e-01 98.4% 82.7%
4934293 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.70 60.0 5.57e-01 100.0% 81.2%
4271175 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.69 59.0 4.68e-01 100.0% 55.6%
3264189 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.69 61.0 4.10e-01 100.0% 58.6%
3792105 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.69 55.0 5.56e-01 93.4% 100.0%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.83e-01 100.0% 96.7%
5038818 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.68 58.0 3.80e-01 98.4% 22.5%
4998572 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 5.17e-01 98.4% 70.6%
3252439 198.1.1.10 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.67 57.0 5.27e-01 96.7% 83.7%
3953573 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.67 54.0 4.07e-01 88.5% 46.9%
None 0.67 54.0 4.07e-01 88.5% 46.9%
None 0.67 54.0 4.20e-01 88.5% 52.3%
5078625 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.67 54.0 4.21e-01 93.4% 93.8%
4946879 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.67 56.0 4.28e-01 90.2% 47.7%
4985324 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.66 55.0 4.01e-01 90.2% 40.6%
3239957 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.66 52.0 3.86e-01 96.7% 32.4%
3890108 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.65 57.0 4.76e-01 100.0% 55.5%
4179237 6028.1.1.0 alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.65 55.0 5.48e-01 96.7% 90.8%
5042174 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.65 54.0 4.11e-01 90.2% 45.9%
None 0.65 54.0 4.10e-01 90.2% 45.9%
3870171 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.63 51.0 4.88e-01 88.5% 100.0%
4993180 183.1.1.1 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.63 52.0 4.15e-01 95.1% 96.9%
4931071 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.62 54.0 3.97e-01 93.4% 40.7%
5030545 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.62 51.0 4.00e-01 95.1% 48.6%
3815745 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.61 49.0 4.61e-01 93.4% 82.5%
4992111 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.61 49.0 3.86e-01 91.8% 49.6%
3243059 564.1.1.10 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › ANIS5_cation-bd 0.60 51.0 4.81e-01 100.0% 80.0%
4203130 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 41.0 3.33e-01 72.1% 83.5%
1206851 183.1.1.1 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.59 50.0 4.50e-01 96.7% 67.9%
3428408 632.2.1.30 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › Auxin_canalis 0.56 42.0 3.98e-01 80.3% 66.7%
3782169 109.4.1.628 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS 0.55 47.0 2.81e-01 98.4% 14.3%
3431353 1128.1.1.10 alpha bundles › LYR protein › LYR protein › LYR protein › VIN3_C 0.52 37.0 3.60e-01 75.4% 70.0%
5053993 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.52 37.0 3.20e-01 75.4% 61.1%
4344838 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.51 41.0 3.71e-01 85.2% 73.8%