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MN013189.1__QDB71374.1__Mic1_05__00005

Bact-Vir

MN013189.1__QDB71374.1__Mic1_05__00005

Identity

Accession:
MN013189 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_Mic1

TaxID: 2587456

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-83
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xjxA04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 54.0 3.69e-01 95.9% 37.0%
3ctpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 49.0 4.16e-01 100.0% 73.4%
3tnjA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 40.0 3.36e-01 75.3% 81.0%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 40.0 3.25e-01 84.9% 63.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3313338 2007.6.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI 0.58 46.0 3.82e-01 87.7% 78.5%
4609873 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.56 46.0 3.80e-01 89.0% 86.2%
3722299 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 49.0 3.55e-01 97.3% 69.8%
4961866 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.54 43.0 2.91e-01 89.0% 85.3%
3950076 1075.3.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+BPD_transp_1_N 0.52 39.0 2.63e-01 83.6% 51.9%
3700355 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 44.0 3.40e-01 97.3% 84.0%
4029615 101.1.2.148 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.51 40.0 3.24e-01 84.9% 79.9%
3483729 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 35.0 3.00e-01 71.2% 75.8%
D2 medium residues 84-206
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 45.0 3.42e-01 87.0% 62.4%
5euvA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 44.0 3.38e-01 83.7% 42.5%
5fszA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.52 45.0 3.63e-01 95.1% 58.8%
5kivA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.52 45.0 3.94e-01 95.1% 82.5%
3q71A00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.52 45.0 3.83e-01 95.1% 77.8%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.51 38.0 3.50e-01 77.2% 67.7%
4d86A01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.51 44.0 3.88e-01 95.1% 82.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3995439 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.66 37.0 4.16e-01 72.4% 70.5%
3425067 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.60 47.0 3.61e-01 83.7% 38.9%
3709495 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.58 36.0 3.71e-01 73.2% 65.8%
3992383 2004.1.1.522 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_19 0.57 36.0 2.96e-01 92.7% 33.3%
317770 101.1.4.22 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF4447 0.55 37.0 3.41e-01 74.8% 51.5%
4002879 2004.1.1.50 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.55 38.0 3.31e-01 70.7% 77.9%
3647149 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.55 49.0 3.58e-01 98.4% 54.6%
4025522 7529.1.1.1 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.53 46.0 3.66e-01 95.1% 79.6%
4038767 7529.1.1.1 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.53 44.0 3.92e-01 93.5% 87.0%
5052038 7529.1.1.0 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.51 44.0 3.79e-01 95.9% 76.6%
3200668 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.51 45.0 3.60e-01 100.0% 83.1%