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MN013189.1__QDB71423.1__Mic1_54__00054

Bact-Vir

MN013189.1__QDB71423.1__Mic1_54__00054

Identity

Accession:
MN013189 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_Mic1

TaxID: 2587456

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-109
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 33.0 4.31e-01 94.2% 98.2%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 33.0 3.73e-01 78.8% 71.6%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 31.0 4.00e-01 75.0% 100.0%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 44.0 3.95e-01 83.7% 85.6%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 3.60e-01 85.6% 81.4%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 40.0 3.47e-01 83.7% 54.2%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.35e-01 91.3% 87.0%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 38.0 2.71e-01 93.3% 26.0%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.50 42.0 3.07e-01 94.2% 87.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4022744 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.64 47.0 3.82e-01 76.9% 78.9%
3401098 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.63 44.0 4.16e-01 72.1% 64.8%
3865506 4210.1.1.3 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.61 48.0 4.72e-01 83.7% 89.1%
3290803 2002.1.1.96 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › S-methyl_trans 0.58 43.0 3.12e-01 77.9% 94.6%
3591211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.28e-01 84.6% 90.0%
3276322 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.55 35.0 3.77e-01 84.6% 76.5%
3931686 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 39.0 4.06e-01 85.6% 78.0%
3614173 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 31.0 3.13e-01 78.8% 53.3%
3948209 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 36.0 4.01e-01 71.2% 90.7%
3709808 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 31.0 3.21e-01 78.8% 60.0%
3452796 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 42.0 2.99e-01 86.5% 68.8%
3559516 391.1.1.28 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › CHRDL_1_2_C 0.52 41.0 4.17e-01 82.7% 100.0%
3831275 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 36.0 2.52e-01 89.4% 22.7%
5001388 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.51 39.0 3.68e-01 83.7% 99.2%