←Back to structures

MN013189.1__QDB71455.1__Mic1_92__00092

Bact-Vir

MN013189.1__QDB71455.1__Mic1_92__00092

Identity

Accession:
MN013189 ↗
Kingdom:
phage

Quality

94.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_Mic1

TaxID: 2587456

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 35-93
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 35.1 1.60e-08 86.4% 97.9%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tgxB00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.59 41.0 3.33e-01 72.9% 71.3%
3uyjA00 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.57 37.0 2.49e-01 74.6% 16.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4839749 3821.1.1.0 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain 0.86 62.0 6.95e-01 84.7% 100.0%
None — 0.82 74.0 5.46e-01 100.0% 60.0%
4998487 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 72.0 6.06e-01 100.0% 60.0%
4999440 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.81 72.0 6.27e-01 100.0% 67.1%
3291398 378.1.1.20 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 0.80 72.0 5.08e-01 100.0% 48.0%
4404465 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.79 70.0 6.76e-01 100.0% 87.7%
4941657 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.78 65.0 6.03e-01 94.9% 72.0%
4989310 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.77 72.0 4.87e-01 100.0% 36.5%
3343086 378.1.1.5 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_1 0.77 68.0 4.57e-01 100.0% 45.1%
4986026 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.77 71.0 4.83e-01 100.0% 37.3%
5082962 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 70.0 5.58e-01 100.0% 60.0%
5016552 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.76 67.0 5.42e-01 100.0% 52.7%
3277754 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.76 66.0 6.20e-01 100.0% 80.0%
5080086 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 58.0 5.24e-01 89.8% 61.3%
3269193 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 67.0 5.09e-01 100.0% 82.2%
1144783 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.74 68.0 4.86e-01 100.0% 59.4%
3386505 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 68.0 5.10e-01 100.0% 65.2%
4370946 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.74 66.0 4.72e-01 100.0% 70.6%
3434619 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 66.0 5.32e-01 100.0% 99.1%
3602299 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 63.0 4.78e-01 100.0% 64.0%
3721920 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 66.0 4.23e-01 100.0% 38.2%
4607935 378.1.1.29 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › ICEA 0.73 66.0 5.05e-01 100.0% 80.0%
3784386 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 49.0 5.53e-01 86.4% 91.1%
3210225 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.73 65.0 5.16e-01 100.0% 76.7%
4938104 378.1.1.20 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 0.73 67.0 4.96e-01 100.0% 62.1%
2991844 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.73 66.0 5.31e-01 100.0% 81.7%
3879791 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.69 61.0 4.08e-01 100.0% 26.7%
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.68 61.0 4.40e-01 100.0% 36.4%
4922670 3820.1.1.6 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI, Cas9_RuvC 0.68 57.0 4.10e-01 93.2% 43.8%
3397473 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.68 60.0 4.75e-01 100.0% 50.0%
3173835 377.1.1.46 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › AI2M-like_HNH 0.57 47.0 4.68e-01 88.1% 93.3%
1436916 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.53 44.0 3.60e-01 91.5% 81.3%