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MN013189.1__QDB71468.1__Mic1_85__00085

Bact-Vir

MN013189.1__QDB71468.1__Mic1_85__00085

Identity

Accession:
MN013189 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 114-238
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.78 44.0 5.30e-01 79.2% 83.1%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.74 37.0 4.49e-01 88.8% 72.6%
3fryA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 36.0 4.73e-01 76.8% 93.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.68 40.0 3.63e-01 84.0% 43.7%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 27.0 2.93e-01 100.0% 44.3%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 53.0 4.11e-01 91.2% 58.3%
4x0qA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 57.0 5.44e-01 96.8% 95.1%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 27.0 3.22e-01 90.4% 56.3%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.61 34.0 4.29e-01 71.2% 89.6%
4lniA02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.61 55.0 4.02e-01 98.4% 55.8%
4clfA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.59 53.0 4.65e-01 97.6% 89.1%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.58 32.0 4.07e-01 77.6% 93.0%
4z7fB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.56 41.0 3.73e-01 84.0% 56.5%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.55 37.0 3.52e-01 100.0% 58.1%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 48.0 4.69e-01 93.6% 88.7%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 37.0 3.90e-01 88.8% 75.9%
3duzA03 6.10.250.3010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 24.0 3.04e-01 72.8% 71.4%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 34.0 3.69e-01 90.4% 80.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3783788 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.97 95.0 6.75e-01 100.0% 41.0%
3638055 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.97 94.0 7.81e-01 100.0% 65.6%
3486431 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.96 93.0 6.61e-01 100.0% 41.6%
3485236 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.95 74.0 7.07e-01 87.2% 70.7%
4379259 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.91 63.0 6.73e-01 77.6% 80.7%
4003030 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.90 60.0 6.88e-01 92.0% 89.5%
3289139 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.89 63.0 6.56e-01 79.2% 78.3%
4115602 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.89 59.0 6.04e-01 77.6% 70.0%
3962170 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.89 59.0 6.33e-01 77.6% 77.3%
4975021 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.87 59.0 7.02e-01 91.2% 98.9%
3965497 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.86 57.0 6.53e-01 91.2% 89.5%
3766383 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.85 63.0 6.46e-01 92.8% 79.2%
4995741 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.84 64.0 6.08e-01 99.2% 68.3%
3338638 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.83 55.0 6.62e-01 73.6% 98.8%
3423771 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.83 58.0 5.80e-01 92.0% 71.2%
5001157 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.82 45.0 5.40e-01 92.8% 80.0%
4985138 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.81 44.0 5.33e-01 92.8% 78.8%
5077345 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.80 38.0 5.27e-01 72.0% 89.2%
3613455 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.80 61.0 5.90e-01 92.0% 71.2%
3598488 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.79 61.0 5.59e-01 92.0% 63.3%
3706910 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.77 62.0 5.18e-01 96.8% 52.5%
3591785 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.77 61.0 5.76e-01 96.8% 70.0%
3608339 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.77 61.0 6.00e-01 96.8% 77.8%
5035705 304.57.1.0 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.74 43.0 5.16e-01 74.4% 85.9%
4982812 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.74 37.0 4.65e-01 88.8% 80.0%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 27.0 2.87e-01 91.2% 38.3%
3615512 305.2.1.0 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 0.70 41.0 4.21e-01 92.8% 60.0%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 28.0 3.29e-01 100.0% 54.4%
3959182 304.48.1.41 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DUF2652 0.66 58.0 5.06e-01 96.0% 88.4%
4971836 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.64 47.0 5.06e-01 92.8% 86.4%
3280378 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.64 54.0 4.92e-01 95.2% 68.5%
5062216 304.55.2.1 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp 0.63 53.0 5.08e-01 88.8% 84.3%
3613321 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.60 54.0 3.57e-01 98.4% 36.3%
4115819 304.48.1.48 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.59 49.0 4.42e-01 92.8% 65.9%
3761098 4070.1.1.0 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.58 51.0 4.60e-01 98.4% 86.9%
3934643 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.54 33.0 3.76e-01 91.2% 80.0%
5001537 3281.1.1.1 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.54 42.0 2.75e-01 82.4% 75.4%
5013509 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.53 43.0 3.49e-01 89.6% 66.4%
3787128 109.4.1.654 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TFB6 0.52 35.0 2.89e-01 98.4% 37.0%
3955858 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 40.0 3.60e-01 83.2% 76.0%
3724381 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.51 46.0 4.43e-01 100.0% 91.7%
D2 medium residues 1-99
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.71 44.0 5.01e-01 70.7% 85.9%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.70 48.0 4.93e-01 73.7% 72.2%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.63 43.0 4.59e-01 70.7% 81.8%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 40.0 4.23e-01 94.9% 82.8%
1puoB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.57 42.0 3.71e-01 76.8% 82.4%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 4.27e-01 74.7% 94.0%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.71e-01 72.7% 74.7%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 27.0 3.34e-01 72.7% 80.3%
6xysA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 42.0 2.74e-01 93.9% 44.7%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.51 34.0 3.28e-01 100.0% 59.3%
3vw5A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.50 44.0 3.00e-01 99.0% 53.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742738 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.99 82.0 7.44e-01 84.8% 77.6%
3783788 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.98 95.0 6.35e-01 100.0% 34.4%
4019040 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.97 94.0 7.56e-01 100.0% 62.4%
3486431 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.96 93.0 6.22e-01 100.0% 35.6%
4506746 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.95 92.0 7.11e-01 100.0% 78.4%
3223878 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.93 88.0 7.51e-01 100.0% 66.9%
3627396 4964.1.1.4 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › Surp 0.90 82.0 6.21e-01 94.9% 88.3%
3936170 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.88 81.0 7.00e-01 97.0% 85.5%
3741635 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.76 48.0 4.81e-01 72.7% 63.0%
3728531 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.73 47.0 4.60e-01 75.8% 60.0%
3661711 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.72 48.0 5.28e-01 76.8% 83.7%
3406651 592.7.1.1 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.66 40.0 4.59e-01 70.7% 81.3%
3337658 610.3.1.3 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 0.65 42.0 3.43e-01 74.7% 35.1%
3475184 101.26.1.1 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.65 38.0 4.68e-01 71.7% 96.7%
167309 592.2.1.3 alpha arrays › PWI domain-like › YugE-like › YugE-like › Nab2 0.63 43.0 4.27e-01 73.7% 66.7%
3236758 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.62 55.0 4.17e-01 98.0% 77.3%
3715528 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 42.0 4.19e-01 71.7% 82.9%
3979957 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.61 44.0 3.80e-01 74.7% 50.0%
2796011 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 4.54e-01 100.0% 78.0%
3016249 532.2.1.0 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.61 43.0 4.30e-01 78.8% 72.7%
5052263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 4.66e-01 78.8% 96.0%
3573598 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.59 41.0 4.01e-01 71.7% 66.4%
4449499 3455.1.1.1 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › RXLR 0.58 31.0 3.73e-01 71.7% 78.5%
3284564 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.56 40.0 3.56e-01 73.7% 73.1%
4513616 3198.1.1.1 alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.55 39.0 3.65e-01 79.8% 56.9%
4955406 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.55 37.0 4.00e-01 73.7% 86.1%
3303852 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 37.0 3.98e-01 71.7% 82.4%
3878033 186.1.1.13 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › QRICH1 0.53 38.0 3.52e-01 74.7% 67.2%
3812752 101.1.1.37 alpha arrays › HTH › HTH › Three-helical HTH › CHDII_SANT-like 0.52 37.0 3.85e-01 73.7% 94.4%
4953903 194.1.1.7 alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Zn_ribbon_2 0.52 37.0 3.93e-01 72.7% 98.8%
3506924 7579.1.1.89 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.50 41.0 2.73e-01 91.9% 48.7%