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MN018232.1__QDH50613.1__X__00147

Bact-Vir

MN018232.1__QDH50613.1__X__00147

Identity

Accession:
MN018232 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-B43

TaxID: 2484638

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-99
PDB
Domain cluster: rep: JN371769.1__AFD02893.1__X__00052__D2-123
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13759.13 best 2OG-FeII_Oxy_5 38.9 1.40e-09 98.9% 86.1%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.80 56.0 4.40e-01 100.0% 36.8%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.78 57.0 5.21e-01 100.0% 59.7%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.71 57.0 5.31e-01 100.0% 68.7%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.71 58.0 5.46e-01 100.0% 74.1%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.70 50.0 4.16e-01 100.0% 43.4%
7wqxA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.68 56.0 5.36e-01 100.0% 78.3%
5dawA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.64 59.0 4.08e-01 100.0% 34.7%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 40.0 3.63e-01 86.0% 45.7%
5c3pD00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.64 53.0 3.65e-01 100.0% 27.4%
4ohvA01 2.60.120.1030 Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain 0.64 48.0 5.11e-01 100.0% 93.8%
2qqkA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.63 57.0 5.27e-01 100.0% 94.9%
2hyxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 46.0 4.15e-01 100.0% 57.3%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 4.61e-01 100.0% 72.4%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.60 49.0 4.83e-01 100.0% 84.2%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 55.0 4.93e-01 100.0% 82.4%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 54.0 4.40e-01 100.0% 55.5%
3g7dA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 51.0 4.66e-01 100.0% 84.7%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 44.0 4.13e-01 90.3% 68.6%
3rwnB00 2.60.120.1120 Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob 0.56 49.0 4.18e-01 100.0% 77.9%
1w9yA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.55 45.0 3.20e-01 100.0% 27.9%
4a42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 43.0 4.00e-01 100.0% 66.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.54 37.0 4.27e-01 75.3% 100.0%
1yq5A00 2.60.120.670 Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. 0.54 48.0 4.17e-01 100.0% 79.9%
2xqxA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 48.0 4.14e-01 100.0% 68.0%
3eypA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 4.00e-01 100.0% 66.7%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.53 46.0 3.51e-01 100.0% 54.6%
2futA03 2.60.40.2750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 34.0 3.40e-01 82.8% 62.5%
1vhvA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.52 38.0 3.34e-01 88.2% 51.1%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 3.78e-01 100.0% 60.6%
3ztdF01 2.60.40.780 Mainly Beta › Sandwich › Immunoglobulin-like › von Hippel-Lindau disease tumour suppressor, beta domain 0.51 39.0 4.01e-01 98.9% 87.8%
1wdeA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 41.0 3.37e-01 89.2% 64.4%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 3.91e-01 91.4% 91.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3710431 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.80 56.0 5.63e-01 100.0% 71.6%
3722051 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.80 64.0 4.88e-01 100.0% 39.5%
3222246 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.72 58.0 5.48e-01 100.0% 72.7%
3213559 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.72 56.0 5.39e-01 100.0% 73.3%
3229647 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.71 56.0 5.79e-01 100.0% 91.8%
3222026 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.71 55.0 5.18e-01 100.0% 67.8%
3213179 10.4.1.27 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF29839 0.70 56.0 5.01e-01 100.0% 61.7%
3935528 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.70 58.0 4.75e-01 100.0% 48.6%
4959651 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.69 52.0 5.33e-01 100.0% 82.2%
3389202 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.69 62.0 5.30e-01 100.0% 72.0%
3565267 10.4.1.23 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CDCP1_CUB_6 0.69 58.0 5.28e-01 100.0% 68.8%
3474916 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.68 57.0 5.17e-01 100.0% 68.0%
3926859 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.67 60.0 5.48e-01 100.0% 77.4%
3223001 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.67 54.0 5.08e-01 100.0% 71.3%
3219057 10.32.1.308 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CUB_M02D8_5_7th 0.66 55.0 5.10e-01 100.0% 72.2%
3620574 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.66 59.0 4.96e-01 100.0% 66.3%
3914914 10.4.1.2 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › C3_CUB2 0.66 54.0 5.14e-01 100.0% 74.5%
3535416 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.66 58.0 5.06e-01 100.0% 71.7%
3799482 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.66 59.0 5.44e-01 100.0% 95.0%
4946205 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 49.0 5.12e-01 98.9% 89.4%
3922295 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.65 59.0 5.78e-01 100.0% 98.0%
3935529 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.65 57.0 4.83e-01 100.0% 88.7%
3931532 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.64 57.0 5.48e-01 98.9% 99.1%
3389378 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 56.0 5.17e-01 100.0% 75.0%
3269943 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 41.0 4.09e-01 81.7% 63.2%
3231211 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.64 55.0 4.96e-01 100.0% 69.6%
3217206 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 57.0 5.39e-01 98.9% 99.1%
3525970 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 53.0 4.93e-01 100.0% 73.9%
3937082 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 52.0 4.90e-01 100.0% 73.0%
3389637 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 51.0 4.88e-01 100.0% 75.5%
5041319 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 48.0 4.86e-01 100.0% 84.4%
3793310 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.62 56.0 4.83e-01 100.0% 75.9%
4544750 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.61 43.0 4.10e-01 89.2% 62.7%
2605261 10.5.1.0 ↗ beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain 0.61 45.0 4.27e-01 100.0% 64.7%
4950723 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 45.0 4.41e-01 100.0% 74.3%
2096157 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 50.0 4.23e-01 100.0% 55.3%
3976053 11.1.1.78 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BIg21 0.58 52.0 4.56e-01 100.0% 72.1%
3621318 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 51.0 5.10e-01 100.0% 95.8%
3406853 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 48.0 4.49e-01 100.0% 72.5%
2913436 109.2.1.24 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › TED_complement 0.58 52.0 3.29e-01 100.0% 86.5%
3896773 10.32.1.234 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PGAP1_3rd 0.57 50.0 4.41e-01 100.0% 74.3%
3341432 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 48.0 4.17e-01 100.0% 60.7%
4944048 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.55 49.0 3.63e-01 100.0% 84.5%
159493 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 47.0 4.14e-01 95.7% 94.2%
3678413 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.54 49.0 3.76e-01 100.0% 51.0%
3699612 10.32.1.202 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FAP42_B2 0.54 47.0 4.29e-01 100.0% 72.3%
3875204 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.78e-01 100.0% 56.6%
999431 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.54 48.0 4.15e-01 100.0% 69.0%
3397497 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 47.0 4.37e-01 100.0% 77.5%
4105812 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.53 47.0 4.16e-01 100.0% 84.9%
3369011 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.53 46.0 2.89e-01 100.0% 20.0%
3987288 10.32.1.86 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C_2 0.53 45.0 4.01e-01 100.0% 68.3%
3285910 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.52 46.0 4.02e-01 100.0% 70.3%
5018131 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.52 37.0 3.23e-01 83.9% 48.3%
3458656 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.52 43.0 3.80e-01 92.5% 98.6%
3553167 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.51e-01 98.9% 54.0%
3512938 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.51 41.0 4.27e-01 86.0% 96.5%
3624388 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.50 40.0 4.08e-01 86.0% 94.4%