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MN029011.1__QEA09758.1__X__00037

Bact-Vir

MN029011.1__QEA09758.1__X__00037

Identity

Accession:
MN029011 ↗
Kingdom:
phage

Quality

68.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Iggyvirus› Pseudomonas_phage_Iggy

TaxID: 2592193

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-75
PDB
Domain cluster: rep: EF523948.1__ABP63626.1__BcepGomrgene55__00055__D5-63
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00472.27 best RF-1 38.5 1.40e-09 75.4% 37.1%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.89 83.0 7.38e-01 100.0% 73.5%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.81 65.0 5.68e-01 100.0% 59.1%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.80 64.0 5.61e-01 100.0% 58.9%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.78 72.0 5.70e-01 100.0% 53.9%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 58.0 5.42e-01 88.5% 78.9%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.71 53.0 5.33e-01 80.3% 91.7%
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.69 42.0 3.69e-01 98.4% 42.2%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.69 59.0 5.21e-01 100.0% 66.3%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.68 30.0 3.31e-01 95.1% 47.1%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 37.0 4.41e-01 93.4% 89.2%
2pm9A02 2.20.25.400 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 33.0 4.27e-01 72.1% 96.7%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 58.0 4.25e-01 100.0% 100.0%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 36.0 3.81e-01 78.7% 61.5%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 51.0 3.98e-01 90.2% 79.4%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 39.0 3.39e-01 100.0% 40.4%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 39.0 2.77e-01 100.0% 21.5%
3kk7A03 3.30.160.840 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 36.0 3.65e-01 82.0% 58.1%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 40.0 3.41e-01 90.2% 40.4%
4uuwA03 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.60 49.0 3.75e-01 96.7% 38.8%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 51.0 4.20e-01 100.0% 81.9%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 3.94e-01 95.1% 49.6%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.58e-01 96.7% 42.2%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 34.0 2.80e-01 100.0% 30.4%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 41.0 4.29e-01 96.7% 80.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 31.0 3.47e-01 75.4% 60.9%
3razA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 47.0 3.72e-01 93.4% 85.9%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.57 38.0 3.26e-01 70.5% 42.0%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.56 39.0 3.22e-01 77.0% 39.8%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.56 37.0 3.05e-01 85.2% 37.3%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 30.0 3.39e-01 70.5% 71.8%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.21e-01 95.1% 37.5%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 3.52e-01 82.0% 62.9%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.37e-01 88.5% 90.6%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.37e-01 86.9% 46.6%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.51 40.0 3.22e-01 93.4% 41.4%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 3.03e-01 100.0% 45.3%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.26e-01 86.9% 62.1%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 39.0 2.99e-01 88.5% 42.9%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.50 35.0 2.37e-01 72.1% 28.7%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4665955 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.91 87.0 7.58e-01 100.0% 71.8%
3661468 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.91 87.0 7.25e-01 100.0% 64.2%
3708684 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.91 87.0 7.56e-01 100.0% 71.8%
3966973 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.91 86.0 7.22e-01 100.0% 64.2%
3598137 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.91 86.0 7.52e-01 100.0% 71.8%
3635007 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.91 86.0 6.55e-01 100.0% 48.8%
4015067 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.91 86.0 6.63e-01 100.0% 50.8%
3591242 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.91 86.0 6.53e-01 100.0% 48.8%
3178493 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.90 86.0 7.04e-01 100.0% 61.0%
3605915 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.90 85.0 7.47e-01 100.0% 71.8%
3753952 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.90 85.0 6.49e-01 100.0% 48.8%
3785552 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.90 85.0 6.24e-01 100.0% 44.3%
3820953 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.89 84.0 7.19e-01 100.0% 68.9%
3926374 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.87 81.0 6.10e-01 100.0% 62.2%
3219930 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.87 81.0 6.22e-01 100.0% 48.8%
3372819 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.86 80.0 6.76e-01 100.0% 65.3%
4809148 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.86 79.0 7.45e-01 100.0% 86.1%
3649935 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.86 78.0 6.70e-01 100.0% 65.6%
3395858 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.83 77.0 5.43e-01 100.0% 50.6%
5020788 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.82 60.0 5.93e-01 100.0% 72.3%
3497120 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.80 66.0 5.68e-01 100.0% 57.9%
5047657 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 54.0 5.60e-01 98.4% 80.0%
3582023 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.75 69.0 5.18e-01 100.0% 57.9%
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 49.0 5.34e-01 95.1% 82.0%
4472716 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.74 67.0 5.18e-01 100.0% 48.5%
3656582 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.73 52.0 5.31e-01 83.6% 76.7%
4132764 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.72 61.0 5.46e-01 100.0% 67.1%
4135153 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.71 59.0 5.49e-01 95.1% 73.3%
3503689 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.71 51.0 4.17e-01 75.4% 90.0%
3481288 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 63.0 5.01e-01 96.7% 53.0%
3924468 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 40.0 2.47e-01 77.0% 11.1%
3501741 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.61 38.0 3.90e-01 77.0% 65.0%
3895387 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 46.0 3.73e-01 98.4% 43.5%
3264233 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.59 43.0 3.42e-01 77.0% 40.3%
3178261 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 46.0 3.60e-01 96.7% 40.8%
4358798 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 45.0 4.23e-01 83.6% 76.0%
4263806 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.57 43.0 4.36e-01 88.5% 83.1%
3685407 220.1.1.215 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_35 0.57 42.0 3.32e-01 91.8% 37.7%
4944131 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 43.0 3.39e-01 96.7% 38.5%
4956219 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 47.0 3.84e-01 95.1% 91.7%
3239964 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 49.0 3.16e-01 100.0% 51.0%
4083451 192.2.1.20 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP 0.56 43.0 3.94e-01 100.0% 62.5%
3266842 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 47.0 3.86e-01 100.0% 75.2%
3995979 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.56 42.0 3.36e-01 100.0% 38.5%
3697241 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.55 40.0 4.19e-01 78.7% 96.2%
4932715 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 45.0 3.65e-01 100.0% 82.2%
3432877 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 34.0 3.36e-01 72.1% 56.9%
3853151 2485.1.1.94 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DJC16_C 0.53 44.0 3.38e-01 93.4% 78.7%
3227010 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 43.0 2.84e-01 96.7% 57.1%
167832 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 43.0 3.37e-01 88.5% 90.6%
3744042 216.1.1.27 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › HGTP_anticodon2 0.53 46.0 3.53e-01 98.4% 71.0%
3077774 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.53 45.0 3.54e-01 96.7% 79.1%
4383296 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 44.0 4.09e-01 93.4% 82.5%
5029687 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 31.0 3.40e-01 91.8% 75.6%
3898218 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 42.0 3.08e-01 93.4% 31.4%
4974812 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 43.0 2.80e-01 98.4% 54.9%
3786078 109.4.1.1764 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.52 42.0 2.48e-01 90.2% 37.4%
5008420 7014.1.1.2 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.51 44.0 3.24e-01 95.1% 63.1%
5038306 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.51 37.0 3.28e-01 88.5% 52.2%
3239340 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.51 38.0 3.55e-01 91.8% 63.7%
3492539 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.50 37.0 2.74e-01 80.3% 45.7%
D2 high residues 267-340
PDB
Domain cluster: rep: AB910392.1__BAO53070.1__KPP23_043__00044__D201-278
D3 medium residues 89-201
PDB