←Back to structures

MN043729.1__QDP42818.1__Goe8_c00340__00034

Bact-Vir

MN043729.1__QDP42818.1__Goe8_c00340__00034

Identity

Accession:
MN043729 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Goettingenvirus› Bacillus_phage_vB_BmeM-Goe8

TaxID: 2593638

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-76
PDB
Domain cluster: rep: OP172807.1__WAX16195.1__EH802P2_00090__00089__D4-73
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.75 56.0 5.27e-01 80.0% 100.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.74 57.0 5.26e-01 81.3% 98.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.71 55.0 4.26e-01 84.0% 97.0%
4faoC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.69 39.0 3.97e-01 100.0% 56.0%
3hzhB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.69 47.0 3.68e-01 70.7% 99.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 46.0 4.62e-01 100.0% 71.1%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 42.0 3.86e-01 100.0% 47.1%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.67 54.0 4.73e-01 89.3% 63.5%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.65 60.0 4.21e-01 100.0% 82.7%
5hw3A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.65 58.0 3.95e-01 100.0% 82.5%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.64 45.0 4.25e-01 85.3% 60.2%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.64 55.0 4.88e-01 100.0% 98.3%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.63 55.0 4.24e-01 100.0% 89.8%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.63 54.0 5.13e-01 97.3% 91.1%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.63 54.0 4.30e-01 100.0% 89.2%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.63 54.0 4.20e-01 100.0% 93.9%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.62 56.0 3.44e-01 100.0% 99.1%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 43.0 3.70e-01 100.0% 47.8%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 54.0 4.09e-01 100.0% 80.9%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 4.47e-01 100.0% 97.6%
3kd4A03 2.60.120.1130 Mainly Beta › Sandwich › Jelly Rolls › 0.59 41.0 3.28e-01 98.7% 38.7%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 53.0 3.65e-01 100.0% 80.4%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.59 41.0 2.74e-01 98.7% 19.1%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.59 42.0 4.50e-01 100.0% 86.2%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 42.0 2.64e-01 100.0% 15.7%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.57 40.0 4.01e-01 73.3% 71.4%
2z0fA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.57 44.0 4.05e-01 86.7% 69.6%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.57 49.0 4.03e-01 98.7% 93.0%
3hm0A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 44.0 3.71e-01 84.0% 80.2%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 50.0 3.27e-01 100.0% 99.1%
3mfdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 51.0 3.52e-01 98.7% 92.4%
3hozA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 44.0 3.97e-01 85.3% 94.2%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 36.0 3.33e-01 98.7% 49.5%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 48.0 3.55e-01 100.0% 41.0%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 49.0 4.35e-01 98.7% 77.4%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.55 46.0 3.93e-01 97.3% 97.7%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 46.0 3.74e-01 97.3% 90.1%
2egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 44.0 3.67e-01 100.0% 51.6%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 39.0 3.63e-01 100.0% 59.4%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.54 43.0 4.35e-01 90.7% 97.4%
5byuA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 41.0 3.53e-01 85.3% 74.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 40.0 3.62e-01 100.0% 56.9%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.79e-01 100.0% 75.0%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.53 38.0 3.09e-01 100.0% 35.5%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.53 44.0 3.01e-01 92.0% 88.0%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 43.0 4.48e-01 96.0% 100.0%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 2.79e-01 86.7% 84.7%
6m3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.38e-01 78.7% 100.0%
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.52 46.0 3.81e-01 98.7% 60.3%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 37.0 3.11e-01 100.0% 42.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 36.0 3.26e-01 100.0% 49.5%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 46.0 3.78e-01 96.0% 63.9%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 41.0 3.55e-01 100.0% 54.6%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 45.0 3.41e-01 97.3% 78.5%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.51 43.0 2.94e-01 93.3% 87.3%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 46.0 2.95e-01 100.0% 100.0%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 44.0 3.44e-01 97.3% 78.3%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 45.0 4.10e-01 97.3% 87.0%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 45.0 3.45e-01 100.0% 81.0%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 45.0 3.82e-01 96.0% 68.9%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 46.0 3.49e-01 100.0% 60.6%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 45.0 3.47e-01 100.0% 59.6%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 44.0 3.77e-01 96.0% 67.2%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 45.0 3.51e-01 100.0% 63.4%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 45.0 4.05e-01 97.3% 87.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991489 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 45.0 4.66e-01 70.7% 84.3%
3287036 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.66 51.0 4.02e-01 86.7% 70.0%
4992877 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.65 56.0 3.99e-01 100.0% 37.6%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 42.0 4.72e-01 100.0% 94.5%
4984749 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.63 56.0 3.86e-01 98.7% 36.9%
3247031 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 49.0 4.31e-01 86.7% 82.9%
2554619 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.59 46.0 3.03e-01 86.7% 29.9%
2034120 5.1.3.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.59 52.0 3.45e-01 100.0% 98.1%
3569201 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 53.0 3.34e-01 100.0% 99.2%
3842596 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 52.0 3.30e-01 100.0% 97.9%
142730 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.58 42.0 3.69e-01 100.0% 52.8%
3236348 11.1.1.961 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28985 0.57 50.0 4.03e-01 100.0% 86.5%
3345277 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.57 51.0 3.21e-01 100.0% 67.5%
1678534 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.56 46.0 4.40e-01 97.3% 76.7%
3489525 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 50.0 3.43e-01 100.0% 31.7%
4250029 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.55 46.0 4.49e-01 98.7% 85.0%
5078978 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 47.0 3.22e-01 96.0% 97.0%
2529893 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.53 44.0 4.57e-01 97.3% 100.0%
5051694 218.4.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.53 35.0 3.10e-01 72.0% 46.4%
3937294 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 47.0 3.56e-01 100.0% 80.6%
3185560 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.53 48.0 3.58e-01 100.0% 53.9%
4999612 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 47.0 3.83e-01 96.0% 63.8%
4938938 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.85e-01 96.0% 66.4%
5045489 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 46.0 3.82e-01 96.0% 67.4%
4940035 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 3.92e-01 94.7% 63.6%
4929825 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.89e-01 96.0% 70.6%
5074371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.69e-01 98.7% 57.2%
5069328 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 45.0 3.91e-01 96.0% 70.4%
3635583 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.51 46.0 3.36e-01 98.7% 54.0%
3592234 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 3.94e-01 96.0% 78.2%
3218243 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 42.0 4.05e-01 98.7% 81.2%
5046010 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 38.0 3.58e-01 84.0% 65.0%
3928706 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.51 46.0 3.53e-01 100.0% 61.8%
3391637 223.1.1.77 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_3 0.51 44.0 3.90e-01 98.7% 67.0%
4022926 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.76e-01 98.7% 94.7%
5040627 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 44.0 3.67e-01 96.0% 63.1%
5050426 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.50 45.0 3.81e-01 96.0% 68.6%
4928263 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 3.87e-01 96.0% 78.2%
5079671 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 43.0 3.81e-01 94.7% 67.3%
5072430 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 45.0 3.72e-01 97.3% 63.1%
5005811 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.50 41.0 4.11e-01 93.3% 93.8%
4998374 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 43.0 3.63e-01 94.7% 59.2%
4029539 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 3.71e-01 94.7% 60.8%