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MN043729.1__QDP42946.1__Goe8_c01730__00162

Bact-Vir

MN043729.1__QDP42946.1__Goe8_c01730__00162

Identity

Accession:
MN043729 ↗
Kingdom:
phage

Quality

73.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Goettingenvirus› Bacillus_phage_vB_BmeM-Goe8

TaxID: 2593638

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
Domain cluster: rep: OQ884030.1__WNO29925.1__X__00193__D4-59
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 57.0 5.57e-01 100.0% 71.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 57.0 5.51e-01 100.0% 72.7%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 50.0 4.15e-01 100.0% 40.4%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.78e-01 96.7% 93.9%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.72e-01 100.0% 82.3%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.72 40.0 3.70e-01 100.0% 42.3%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 5.70e-01 100.0% 89.7%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 5.30e-01 100.0% 74.3%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.67 60.0 5.20e-01 100.0% 69.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.10e-01 100.0% 67.5%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 5.17e-01 100.0% 95.8%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 58.0 5.60e-01 100.0% 88.2%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 49.0 3.54e-01 100.0% 30.4%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.27e-01 100.0% 66.7%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 55.0 5.04e-01 100.0% 87.5%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.60 38.0 3.39e-01 100.0% 43.3%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 3.66e-01 100.0% 38.5%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 44.0 3.31e-01 100.0% 31.4%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 42.0 4.54e-01 100.0% 93.9%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 40.0 3.06e-01 100.0% 29.7%
7p0eA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.36e-01 100.0% 43.4%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.58 39.0 3.06e-01 100.0% 32.3%
3rhaA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 49.0 2.96e-01 100.0% 19.6%
1xf1A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.57 47.0 3.70e-01 100.0% 82.4%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 44.0 3.63e-01 100.0% 45.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 41.0 3.00e-01 100.0% 28.1%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.11e-01 100.0% 88.7%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 42.0 3.76e-01 88.3% 80.4%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 40.0 2.65e-01 81.7% 95.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 47.0 3.93e-01 100.0% 58.7%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.53 41.0 3.33e-01 100.0% 43.6%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 41.0 3.25e-01 100.0% 39.7%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 40.0 3.53e-01 85.0% 73.4%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.94e-01 100.0% 68.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.64e-01 100.0% 65.8%
4yn3A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.52 44.0 3.53e-01 100.0% 96.3%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.23e-01 100.0% 46.9%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.41e-01 100.0% 52.1%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 41.0 3.28e-01 100.0% 42.3%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 39.0 3.07e-01 100.0% 35.9%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 40.0 3.33e-01 100.0% 45.9%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 44.0 2.75e-01 100.0% 33.2%
6l08A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 42.0 3.14e-01 100.0% 35.8%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 44.0 3.17e-01 100.0% 35.1%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 2.98e-01 100.0% 32.5%
2kcoA01 2.40.10.310 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 41.0 3.94e-01 100.0% 77.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 39.0 4.07e-01 100.0% 100.0%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.50 39.0 3.16e-01 100.0% 43.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4656461 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 56.0 5.61e-01 98.3% 78.3%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 57.0 5.52e-01 100.0% 73.8%
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.75 64.0 6.27e-01 98.3% 96.9%
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 6.17e-01 100.0% 94.7%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 58.0 5.68e-01 100.0% 76.9%
4937158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.12e-01 100.0% 75.0%
3960756 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.71 47.0 2.91e-01 98.3% 12.2%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.52e-01 98.3% 89.1%
3607227 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.69 53.0 5.72e-01 98.3% 100.0%
4990637 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 53.0 4.75e-01 100.0% 60.2%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.24e-01 100.0% 72.0%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.68 48.0 5.14e-01 100.0% 90.0%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.67 57.0 5.15e-01 100.0% 70.0%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.66e-01 100.0% 90.0%
3265105 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.66 45.0 3.92e-01 100.0% 45.3%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.65 60.0 5.37e-01 100.0% 78.8%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 56.0 5.05e-01 100.0% 76.2%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.61 45.0 3.52e-01 100.0% 36.2%
3894725 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.61 44.0 3.37e-01 100.0% 34.1%
3786396 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.60 52.0 4.10e-01 100.0% 46.2%
4941845 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 45.0 4.71e-01 100.0% 94.3%
5010420 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 42.0 3.50e-01 100.0% 42.6%
3508990 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.56 47.0 4.64e-01 100.0% 90.6%
3320228 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.56 41.0 2.41e-01 81.7% 47.5%
3467990 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.56 41.0 2.38e-01 83.3% 44.2%
3277790 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 49.0 4.09e-01 100.0% 59.0%
3937610 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 46.0 3.75e-01 100.0% 96.0%
4032992 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 46.0 3.82e-01 100.0% 52.7%
4292753 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 44.0 3.96e-01 100.0% 93.7%
3510040 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.54 45.0 4.13e-01 100.0% 72.5%
4207197 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 48.0 4.04e-01 100.0% 61.0%
3703449 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 47.0 4.40e-01 100.0% 90.7%
4361509 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 47.0 3.99e-01 100.0% 61.0%
4373113 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 47.0 3.92e-01 100.0% 58.1%
3228120 11.1.1.408 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF281 0.53 44.0 3.74e-01 100.0% 55.3%
3383282 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.53 45.0 3.49e-01 100.0% 98.0%
2132422 10.1.1.14 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CoV_S1 0.53 45.0 3.07e-01 100.0% 37.4%
3352566 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.52 44.0 3.13e-01 100.0% 95.1%
3378819 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.52 44.0 3.43e-01 100.0% 96.6%
3426874 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.52 43.0 3.45e-01 98.3% 98.5%
5036976 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.56e-01 100.0% 48.3%
4355655 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 43.0 3.55e-01 100.0% 96.0%
3366242 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.52 43.0 3.42e-01 98.3% 99.3%
3306408 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.52 44.0 3.39e-01 100.0% 100.0%
3479342 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.52 36.0 3.18e-01 100.0% 46.0%
4981103 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 42.0 3.49e-01 100.0% 92.8%
3806681 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.51 44.0 2.85e-01 98.3% 97.9%
3729046 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 40.0 2.42e-01 98.3% 12.4%
3939200 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 43.0 3.46e-01 100.0% 91.5%
4002929 223.1.1.101 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.51 37.0 2.55e-01 81.7% 26.7%
5083959 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.50 44.0 3.39e-01 100.0% 51.4%
3420298 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.50 42.0 3.29e-01 100.0% 98.6%
4978421 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.50 43.0 3.52e-01 100.0% 59.2%
3998052 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.50 43.0 3.57e-01 100.0% 85.2%