←Back to structures
MN044033.1__QDB71762.1__CPT_Marfa_107__00107
Bact-VirMN044033.1__QDB71762.1__CPT_Marfa_107__00107
Identity
- Accession:
- MN044033 ↗
- Kingdom:
- phage
Quality
78.1
mean pLDDT
Taxonomy
TaxID: 2587809
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-48
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 38.0 | 3.62e-01 | 85.4% | 47.5% |
| 3cngA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.62 | 42.0 | 4.71e-01 | 85.4% | 100.0% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.61 | 45.0 | 3.70e-01 | 93.8% | 40.8% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 40.0 | 3.93e-01 | 87.5% | 60.4% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 52.0 | 3.65e-01 | 97.9% | 92.7% |
| 4l2iB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 36.0 | 2.33e-01 | 87.5% | 11.0% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 47.0 | 2.90e-01 | 95.8% | 28.3% |
| 1e2rA02 | 2.140.10.20 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 0.58 | 50.0 | 2.92e-01 | 100.0% | 30.1% |
| 3njfA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 37.0 | 2.97e-01 | 72.9% | 28.6% |
| 1l0qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 2.92e-01 | 97.9% | 37.2% |
| 1tm0A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.56 | 38.0 | 2.72e-01 | 95.8% | 21.3% |
| 1s7mA03 | 2.20.25.140 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 33.0 | 3.62e-01 | 77.1% | 85.7% |
| 1zxuA00 | 2.40.160.200 | Mainly Beta › Beta Barrel › Porin › LURP1-related | 0.56 | 46.0 | 3.31e-01 | 100.0% | 79.0% |
| 3dmgA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 39.0 | 2.71e-01 | 77.1% | 54.1% |
| 2i0kA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.56 | 39.0 | 3.00e-01 | 77.1% | 73.0% |
| 1f20A02 | 1.20.990.10 | Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 | 0.56 | 41.0 | 2.95e-01 | 83.3% | 44.7% |
| 5c2vB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 46.0 | 2.77e-01 | 95.8% | 21.6% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.55 | 41.0 | 3.37e-01 | 95.8% | 42.1% |
| 4o9dA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 46.0 | 2.77e-01 | 100.0% | 31.5% |
| 2pmeA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 47.0 | 2.89e-01 | 100.0% | 33.7% |
| 2ojhA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 46.0 | 2.92e-01 | 100.0% | 39.4% |
| 6iw6A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 37.0 | 2.85e-01 | 93.8% | 32.4% |
| 1c5kA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 46.0 | 2.92e-01 | 100.0% | 40.2% |
| 3lppA02 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.53 | 44.0 | 2.91e-01 | 100.0% | 80.6% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.53 | 39.0 | 2.60e-01 | 95.8% | 16.7% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 40.0 | 3.11e-01 | 89.6% | 94.0% |
| 3u4yA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 42.0 | 2.61e-01 | 95.8% | 37.9% |
| 1llnA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.52 | 44.0 | 3.04e-01 | 100.0% | 52.0% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.39e-01 | 91.7% | 78.0% |
| 2fpeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 32.0 | 3.03e-01 | 85.4% | 45.2% |
| 1qz8A01 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.51 | 40.0 | 3.30e-01 | 97.9% | 52.4% |
| 4pn0C00 | 3.20.100.10 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like | 0.51 | 39.0 | 2.55e-01 | 89.6% | 66.8% |
| 4kx7A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.50 | 38.0 | 2.66e-01 | 93.8% | 82.6% |
| 4v19S00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.50 | 43.0 | 3.12e-01 | 100.0% | 46.2% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3265494 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 45.0 | 4.64e-01 | 89.6% | 73.3% |
| 4211411 | 386.1.1.231 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF2709 | 0.68 | 50.0 | 3.99e-01 | 89.6% | 40.9% |
| 3475247 | 4184.1.1.1 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 | 0.66 | 48.0 | 4.26e-01 | 97.9% | 54.3% |
| 3574976 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.66 | 48.0 | 4.66e-01 | 95.8% | 69.1% |
| 3388135 | 4292.2.1.1 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG | 0.65 | 49.0 | 4.32e-01 | 95.8% | 53.3% |
| 4055111 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.61 | 49.0 | 3.65e-01 | 89.6% | 96.0% |
| 4946001 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.61 | 52.0 | 3.13e-01 | 100.0% | 30.4% |
| 4938265 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.60 | 40.0 | 3.86e-01 | 95.8% | 56.7% |
| 3349740 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 48.0 | 4.92e-01 | 87.5% | 93.3% |
| 3308072 | 375.1.1.53 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 | 0.60 | 41.0 | 4.45e-01 | 87.5% | 87.5% |
| 4358801 | 4.1.1.178 ↗ | beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 | 0.60 | 49.0 | 3.70e-01 | 89.6% | 98.2% |
| 4952261 | 708.1.2.2 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › SelR | 0.60 | 46.0 | 3.52e-01 | 91.7% | 37.3% |
| 4962743 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 43.0 | 4.42e-01 | 89.6% | 84.4% |
| 3478153 | 4184.1.1.1 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 | 0.59 | 42.0 | 3.78e-01 | 95.8% | 52.9% |
| 3970048 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.59 | 44.0 | 3.86e-01 | 93.8% | 51.3% |
| None | — | 0.59 | 49.0 | 3.16e-01 | 93.8% | 57.0% | |
| 2724032 | 708.1.2.2 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › SelR | 0.59 | 46.0 | 3.18e-01 | 87.5% | 78.2% |
| 4463632 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.59 | 41.0 | 3.44e-01 | 95.8% | 40.0% |
| 4117020 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 40.0 | 3.83e-01 | 89.6% | 60.0% |
| 4992408 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 42.0 | 4.32e-01 | 87.5% | 82.2% |
| 5031658 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 47.0 | 4.68e-01 | 91.7% | 98.0% |
| 3484072 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.58 | 47.0 | 3.47e-01 | 93.8% | 42.5% |
| 5038361 | 4294.1.1.13 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB | 0.57 | 42.0 | 4.31e-01 | 91.7% | 84.4% |
| 3433500 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 42.0 | 4.25e-01 | 89.6% | 80.0% |
| 3836411 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.57 | 42.0 | 3.94e-01 | 91.7% | 65.0% |
| 4544637 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.57 | 39.0 | 3.27e-01 | 95.8% | 38.7% |
| 3261529 | 5.1.5.27 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N | 0.57 | 50.0 | 2.91e-01 | 100.0% | 37.2% |
| 3356481 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.56 | 41.0 | 3.49e-01 | 95.8% | 45.8% |
| 5062107 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 47.0 | 2.89e-01 | 95.8% | 24.7% |
| 4938517 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 47.0 | 2.88e-01 | 95.8% | 23.7% |
| 3700010 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 47.0 | 2.87e-01 | 91.7% | 38.9% |
| 4962280 | 375.1.1.347 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26237 | 0.56 | 42.0 | 4.35e-01 | 83.3% | 86.7% |
| 3496211 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.56 | 42.0 | 3.82e-01 | 97.9% | 58.6% |
| 3402962 | 101.1.21.1 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N | 0.55 | 41.0 | 2.53e-01 | 79.2% | 18.9% |
| 4819839 | 5.1.5.27 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N | 0.55 | 45.0 | 3.47e-01 | 93.8% | 70.5% |
| 3936316 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.54 | 37.0 | 3.63e-01 | 85.4% | 65.5% |
| 3722095 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.54 | 42.0 | 2.57e-01 | 89.6% | 41.2% |
| 3390786 | 244.2.1.12 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › CFAP61_dimer | 0.53 | 35.0 | 2.79e-01 | 87.5% | 29.5% |
| 3190226 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 35.0 | 2.73e-01 | 91.7% | 26.9% |
| 3522616 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.52 | 40.0 | 2.51e-01 | 89.6% | 31.7% |
| 3184613 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 42.0 | 2.91e-01 | 89.6% | 31.1% |
| 3227528 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.52 | 32.0 | 3.42e-01 | 81.2% | 74.3% |
| 4174957 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.52 | 40.0 | 2.91e-01 | 100.0% | 53.3% |
| 145091 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.52 | 42.0 | 2.61e-01 | 95.8% | 37.9% |
| 3673032 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 42.0 | 3.88e-01 | 100.0% | 77.1% |
| 3186255 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.51 | 41.0 | 2.53e-01 | 95.8% | 14.1% |
| 3269932 | 5.1.5.27 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N | 0.51 | 42.0 | 2.49e-01 | 100.0% | 37.4% |
| 4976753 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 36.0 | 3.56e-01 | 85.4% | 69.1% |
| 3676802 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 38.0 | 2.23e-01 | 100.0% | 8.1% |
| 4202852 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.51 | 38.0 | 3.09e-01 | 85.4% | 75.2% |
| 3220906 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.51 | 41.0 | 2.78e-01 | 100.0% | 51.3% |
| 3973778 | 3982.1.1.0 ↗ | a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ | 0.50 | 41.0 | 3.38e-01 | 100.0% | 60.0% |
| 4998404 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 33.0 | 3.20e-01 | 83.3% | 55.0% |
| 3236058 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.50 | 41.0 | 3.47e-01 | 97.9% | 54.1% |
| 5039125 | 375.1.1.83 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB | 0.50 | 40.0 | 3.74e-01 | 97.9% | 70.8% |