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MN047793.1__QDJ96203.1__Xoosp13_16__00016

Bact-Vir

MN047793.1__QDJ96203.1__Xoosp13_16__00016

Identity

Accession:
MN047793 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_Xoo-sp13

TaxID: 2591401

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-101
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 58.0 5.67e-01 99.0% 92.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 35.0 4.58e-01 77.8% 100.0%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 55.0 5.15e-01 99.0% 93.8%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 5.20e-01 99.0% 81.8%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.62 54.0 5.08e-01 99.0% 85.5%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 5.33e-01 98.0% 91.6%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 35.0 4.19e-01 77.8% 87.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 36.0 4.31e-01 80.8% 87.7%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 34.0 4.16e-01 79.8% 88.3%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.94e-01 98.0% 95.9%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 33.0 3.00e-01 81.8% 38.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 4.18e-01 78.8% 85.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 33.0 3.86e-01 84.8% 88.5%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 35.0 3.20e-01 72.7% 46.5%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 34.0 3.11e-01 71.7% 45.9%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 4.12e-01 93.9% 81.0%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 4.06e-01 92.9% 81.9%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.91e-01 91.9% 78.1%
2cpqA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 28.0 3.42e-01 98.0% 76.6%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 38.0 2.72e-01 75.8% 24.6%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 31.0 3.51e-01 89.9% 79.4%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.54 41.0 4.34e-01 81.8% 92.2%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 34.0 3.43e-01 93.9% 63.9%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.96e-01 94.9% 82.4%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 42.0 3.79e-01 88.9% 100.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 32.0 3.75e-01 86.9% 98.4%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 31.0 3.45e-01 91.9% 78.9%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 37.0 2.55e-01 75.8% 25.3%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.49e-01 71.7% 77.1%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.30e-01 71.7% 62.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 32.0 3.53e-01 78.8% 84.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934156 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 61.0 5.81e-01 98.0% 87.8%
3173029 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 60.0 4.82e-01 98.0% 50.5%
3419945 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.68 34.0 3.21e-01 73.7% 40.9%
3262415 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 60.0 5.75e-01 99.0% 84.3%
3680900 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.68 59.0 5.58e-01 97.0% 90.8%
3702987 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.67 57.0 4.30e-01 94.9% 43.3%
3252808 1170.1.2.0 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.65 38.0 4.44e-01 75.8% 81.4%
3925891 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 52.0 5.41e-01 98.0% 96.7%
3953959 4.1.1.424 ↗ beta barrels › SH3 › SH3 › SH3 › PF29823 0.65 34.0 4.58e-01 84.8% 100.0%
3266727 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 55.0 5.28e-01 98.0% 80.0%
4255411 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.65 55.0 5.40e-01 100.0% 86.4%
3509036 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.89e-01 99.0% 71.2%
3781450 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.62 55.0 5.05e-01 99.0% 83.8%
5037801 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 50.0 5.24e-01 86.9% 96.6%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.45e-01 85.9% 90.5%
4104915 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.60 36.0 4.32e-01 90.9% 98.3%
3167693 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 45.0 2.82e-01 81.8% 22.4%
5039311 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.58 44.0 3.79e-01 78.8% 84.7%
4019657 220.1.1.210 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7611 0.58 50.0 4.40e-01 98.0% 68.4%
4932609 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 35.0 4.07e-01 85.9% 89.2%
3500002 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.56 41.0 2.90e-01 76.8% 26.1%
4459163 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 37.0 3.48e-01 84.8% 52.8%
4930470 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 37.0 3.96e-01 84.8% 78.8%
4028916 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.56 44.0 4.25e-01 82.8% 84.5%
5055963 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.56 32.0 3.66e-01 71.7% 78.6%
3710725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.75e-01 79.8% 29.2%
3618665 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 38.0 2.54e-01 75.8% 19.7%
3579675 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 38.0 3.55e-01 76.8% 58.3%
5003597 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 36.0 3.74e-01 78.8% 72.2%
3168028 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 42.0 2.88e-01 81.8% 26.7%
4188283 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 33.0 3.69e-01 70.7% 76.2%
3782836 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 39.0 2.63e-01 76.8% 22.1%
3517557 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.54 38.0 2.56e-01 75.8% 20.9%
1144827 4.1.1.79 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3601 0.54 41.0 4.36e-01 81.8% 93.3%
5021659 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 35.0 3.70e-01 78.8% 74.4%
4430771 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 37.0 3.29e-01 72.7% 58.6%
5044087 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.53 42.0 3.65e-01 84.8% 84.7%
3932713 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 38.0 2.62e-01 77.8% 21.7%
3377650 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.90e-01 78.8% 31.1%
160497 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 29.0 3.25e-01 78.8% 70.4%
4046874 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.51 39.0 3.58e-01 80.8% 70.0%
3845979 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 3.25e-01 70.7% 56.8%
5062762 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.51 35.0 3.43e-01 71.7% 70.9%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 30.0 3.66e-01 74.7% 100.0%