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MN047793.1__QDJ96205.1__Xoosp13_18__00018
Bact-VirMN047793.1__QDJ96205.1__Xoosp13_18__00018
Identity
- Accession:
- MN047793 ↗
- Kingdom:
- phage
Quality
94.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-69
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.85 | 75.0 | 6.37e-01 | 95.7% | 90.8% |
| 3cqcA00 | 1.20.190.50 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › | 0.84 | 76.0 | 5.11e-01 | 100.0% | 37.2% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.84 | 67.0 | 5.81e-01 | 85.5% | 100.0% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.82 | 74.0 | 5.06e-01 | 100.0% | 41.6% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.79 | 68.0 | 6.25e-01 | 95.7% | 96.6% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 67.0 | 6.63e-01 | 95.7% | 98.6% |
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 63.0 | 5.26e-01 | 87.0% | 64.0% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 65.0 | 6.04e-01 | 97.1% | 92.0% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 69.0 | 6.23e-01 | 100.0% | 78.3% |
| 1z23A00 | 1.20.120.830 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain | 0.75 | 66.0 | 4.97e-01 | 97.1% | 52.1% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.75 | 67.0 | 5.41e-01 | 100.0% | 61.5% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 65.0 | 6.24e-01 | 95.7% | 92.3% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 57.0 | 6.16e-01 | 84.1% | 100.0% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.72 | 61.0 | 5.90e-01 | 94.2% | 97.4% |
| 1wyrA00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.68 | 37.0 | 3.08e-01 | 76.8% | 30.6% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 58.0 | 5.08e-01 | 98.6% | 77.4% |
| 7d3uC01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 52.0 | 4.52e-01 | 88.4% | 67.3% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 50.0 | 4.74e-01 | 85.5% | 95.1% |
| 4am6A03 | 3.30.420.580 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.60 | 44.0 | 2.96e-01 | 78.3% | 23.6% |
| 3fhnA01 | 6.10.280.210 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A | 0.59 | 48.0 | 3.64e-01 | 94.2% | 37.0% |
| 1h6vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 43.0 | 2.98e-01 | 84.1% | 41.4% |
| 3piwA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 41.0 | 3.28e-01 | 84.1% | 38.3% |
| 3nf4A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 37.0 | 3.10e-01 | 78.3% | 41.2% |
| 2bjfA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.54 | 38.0 | 2.43e-01 | 73.9% | 74.5% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3257654 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.87 | 65.0 | 5.23e-01 | 98.6% | 43.2% |
| 5036014 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.87 | 74.0 | 6.59e-01 | 91.3% | 98.9% |
| 3628093 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.86 | 77.0 | 6.63e-01 | 97.1% | 72.4% |
| 3690657 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.83 | 74.0 | 5.81e-01 | 97.1% | 62.9% |
| 3178900 | 192.2.1.30 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Uds1 | 0.82 | 75.0 | 5.83e-01 | 100.0% | 62.1% |
| 3399224 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.80 | 69.0 | 4.96e-01 | 92.8% | 68.9% |
| 4314535 | 150.5.1.64 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › DUF5344 | 0.78 | 67.0 | 6.39e-01 | 97.1% | 82.5% |
| 4224247 | 150.5.1.64 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › DUF5344 | 0.78 | 68.0 | 6.28e-01 | 100.0% | 76.4% |
| 3079134 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 67.0 | 4.28e-01 | 95.7% | 24.1% |
| 5081618 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.77 | 67.0 | 5.59e-01 | 98.6% | 79.2% |
| 3959763 | 150.7.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE | 0.74 | 64.0 | 5.97e-01 | 100.0% | 76.7% |
| 3959712 | 150.7.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE | 0.73 | 61.0 | 5.86e-01 | 97.1% | 81.2% |
| 3584762 | 109.30.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin Nup84/Nup107 › Nucleoporin Nup84/Nup107 › Nup84_Nup100 | 0.72 | 62.0 | 3.54e-01 | 95.7% | 14.9% |
| 3891023 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.72 | 63.0 | 4.67e-01 | 98.6% | 46.1% |
| 3962381 | 150.5.1.50 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › EspA_EspE | 0.72 | 64.0 | 6.09e-01 | 98.6% | 87.5% |
| 3885615 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.70 | 46.0 | 4.02e-01 | 78.3% | 44.7% |
| 3650079 | 192.29.1.191 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF3741 | 0.70 | 62.0 | 5.12e-01 | 100.0% | 60.8% |
| 3412102 | 109.54.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Nol11_C | 0.68 | 48.0 | 3.87e-01 | 72.5% | 41.7% |
| 4176828 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 50.0 | 5.00e-01 | 87.0% | 95.7% |
| 3993680 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.56 | 46.0 | 3.91e-01 | 100.0% | 94.6% |
D2
medium
residues 70-125
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ofuA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.79 | 64.0 | 4.11e-01 | 89.3% | 88.0% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.72 | 61.0 | 6.07e-01 | 94.6% | 94.7% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 48.0 | 3.49e-01 | 71.4% | 31.9% |
| 5cr4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.65 | 55.0 | 3.72e-01 | 98.2% | 72.8% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.65 | 55.0 | 5.35e-01 | 100.0% | 88.9% |
| 1iuqA01 | 1.10.1200.50 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal | 0.65 | 50.0 | 4.67e-01 | 91.1% | 85.5% |
| 7bqiA01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.64 | 52.0 | 3.76e-01 | 89.3% | 32.5% |
| 1ysyA00 | 1.10.8.370 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › nsp7 replicase | 0.63 | 50.0 | 4.53e-01 | 96.4% | 70.6% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.62 | 40.0 | 3.84e-01 | 73.2% | 57.8% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.59 | 52.0 | 4.76e-01 | 100.0% | 96.1% |
| 1r71A02 | 6.10.250.140 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 38.0 | 3.86e-01 | 89.3% | 87.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3929576 | 190.1.1.2 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › CHDNT | 0.75 | 56.0 | 4.89e-01 | 82.1% | 52.9% |
| 4610458 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.75 | 56.0 | 5.83e-01 | 83.9% | 92.0% |
| 3627947 | 190.1.1.2 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › CHDNT | 0.70 | 50.0 | 4.57e-01 | 80.4% | 57.3% |
| 3592217 | 541.1.1.0 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit | 0.68 | 41.0 | 4.13e-01 | 82.1% | 61.8% |
| 3270069 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.66 | 45.0 | 4.10e-01 | 96.4% | 53.3% |
| 4033271 | 4125.1.1.0 ↗ | alpha superhelices › BH3980-like › BH3980-like › BH3980-like | 0.65 | 56.0 | 4.66e-01 | 98.2% | 60.0% |
| 4312088 | 3226.1.1.5 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › BenE | 0.63 | 54.0 | 3.25e-01 | 96.4% | 14.0% |
| 5060848 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.59 | 50.0 | 4.92e-01 | 92.9% | 100.0% |
| 4243821 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.55 | 44.0 | 4.23e-01 | 96.4% | 90.0% |
| 4962040 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 2.94e-01 | 76.8% | 83.6% |