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MN047793.1__QDJ96272.1__Xoosp13_85__00085

Bact-Vir

MN047793.1__QDJ96272.1__Xoosp13_85__00085

Identity

Accession:
MN047793 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_Xoo-sp13

TaxID: 2591401

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ihjA02 1.10.287.1970 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 37.0 4.34e-01 98.2% 76.3%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.67 60.0 5.54e-01 100.0% 88.7%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.66 45.0 4.90e-01 83.9% 91.1%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.64 56.0 4.37e-01 100.0% 85.2%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 47.0 3.88e-01 82.1% 53.7%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 3.78e-01 100.0% 43.1%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 49.0 4.08e-01 89.3% 49.5%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.62 40.0 3.85e-01 83.9% 56.9%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 48.0 4.02e-01 89.3% 50.0%
2nbsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 44.0 3.57e-01 78.6% 75.9%
6ioyC02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 52.0 3.62e-01 100.0% 88.6%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.61 47.0 3.38e-01 100.0% 29.2%
3nuwA02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.60 45.0 3.06e-01 100.0% 22.0%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 36.0 2.75e-01 100.0% 25.0%
3tx4A02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.59 49.0 3.74e-01 96.4% 98.6%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 50.0 3.69e-01 100.0% 66.0%
3iylW04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 45.0 3.09e-01 92.9% 40.3%
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.57 49.0 4.54e-01 100.0% 81.1%
3bexA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 46.0 3.87e-01 100.0% 99.1%
1zatA02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.55 47.0 3.74e-01 100.0% 99.2%
2ftxA00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.55 42.0 3.63e-01 83.9% 56.2%
2etjA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 48.0 3.25e-01 100.0% 47.1%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.54 38.0 3.33e-01 100.0% 46.2%
3bu2A02 3.30.1940.10 Alpha Beta › 2-Layer Sandwich › Nucleic acid-binding protein fold › YtpR-like 0.54 40.0 3.79e-01 98.2% 65.2%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 47.0 3.41e-01 100.0% 56.4%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.53 33.0 3.68e-01 91.1% 85.4%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.53 38.0 3.31e-01 76.8% 85.4%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.53 38.0 3.03e-01 80.4% 44.0%
5cqgA04 3.30.70.2630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.52e-01 94.6% 82.1%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 43.0 3.84e-01 100.0% 95.3%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 2.64e-01 98.2% 77.3%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 44.0 3.34e-01 100.0% 81.9%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.50 41.0 3.22e-01 94.6% 42.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4003280 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.87 58.0 6.74e-01 78.6% 97.5%
3246204 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.79 54.0 5.99e-01 78.6% 100.0%
3218679 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.79 61.0 5.39e-01 89.3% 58.7%
3224541 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.78 60.0 5.77e-01 89.3% 72.3%
3212999 386.1.1.25 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_5 0.78 60.0 6.32e-01 89.3% 94.0%
3687321 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.78 53.0 5.96e-01 82.1% 100.0%
4002036 386.1.1.271 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7565 0.77 53.0 5.01e-01 75.0% 61.5%
3236050 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.73 50.0 4.00e-01 71.4% 47.3%
3780130 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.73 53.0 4.08e-01 78.6% 46.2%
3757597 386.1.1.286 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_ZIC, zf-C2H2_15 0.72 57.0 4.77e-01 85.7% 83.2%
4438233 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.71 49.0 4.02e-01 100.0% 39.0%
3545113 386.1.1.126 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_7th_ZNF462 0.71 49.0 5.38e-01 82.1% 91.1%
5024305 212.1.1.60 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N 0.70 52.0 3.39e-01 78.6% 63.0%
3686534 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 51.0 5.55e-01 92.9% 97.8%
3788920 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 54.0 4.68e-01 87.5% 57.8%
3397452 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.68 52.0 5.10e-01 83.9% 78.3%
4148226 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.68 49.0 3.99e-01 100.0% 40.0%
3940961 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.68 51.0 4.19e-01 82.1% 45.7%
3503750 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 45.0 5.02e-01 71.4% 100.0%
3400395 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 45.0 3.59e-01 71.4% 45.2%
4544501 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.66 48.0 5.06e-01 100.0% 90.0%
3317170 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.66 45.0 4.90e-01 78.6% 91.1%
3209145 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 52.0 4.68e-01 89.3% 98.8%
3534814 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.65 50.0 4.69e-01 85.7% 80.0%
3570151 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.65 47.0 4.54e-01 82.1% 67.7%
3913145 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.64 48.0 4.98e-01 83.9% 90.6%
3168807 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.64 56.0 4.58e-01 100.0% 61.9%
4017797 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 48.0 4.65e-01 83.9% 89.2%
3221700 2484.6.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.64 56.0 4.05e-01 100.0% 49.4%
3546286 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 48.0 3.74e-01 82.1% 40.8%
3618504 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.64 48.0 4.74e-01 83.9% 85.0%
3586047 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.63 43.0 2.70e-01 71.4% 28.6%
5044288 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.65e-01 100.0% 65.0%
167520 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 47.0 3.72e-01 83.9% 46.9%
4543035 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.61 54.0 3.22e-01 100.0% 37.3%
5047010 2008.1.1.63 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI 0.60 47.0 3.09e-01 83.9% 46.7%
3604346 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.59 40.0 3.31e-01 75.0% 37.0%
4396276 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 50.0 4.25e-01 100.0% 78.0%
3516442 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 42.0 3.45e-01 78.6% 75.7%
3956312 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 41.0 2.71e-01 100.0% 16.5%
5014656 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.57 45.0 4.39e-01 91.1% 84.6%
4086202 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.56 44.0 4.25e-01 89.3% 90.8%
3671443 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 46.0 4.40e-01 96.4% 80.0%
4609836 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.09e-01 96.4% 91.8%
3989835 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 48.0 3.82e-01 100.0% 95.0%
4104868 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.55 43.0 4.18e-01 89.3% 90.8%
4369577 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.55 43.0 4.25e-01 87.5% 95.0%
4336160 319.1.1.21 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › GvpH 0.54 42.0 3.70e-01 89.3% 57.5%
4584323 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.54 45.0 4.41e-01 94.6% 93.3%
4263366 2004.1.1.219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.53 43.0 2.89e-01 92.9% 73.5%
3171382 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.53 45.0 3.96e-01 100.0% 71.1%
3274717 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 38.0 2.29e-01 100.0% 9.8%
3804439 2.1.1.23 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.53 42.0 3.30e-01 100.0% 79.3%
4645958 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.52 43.0 4.22e-01 94.6% 95.0%
4473128 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.51 42.0 4.07e-01 94.6% 89.2%
3267814 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 40.0 3.59e-01 98.2% 58.9%
3320244 53.1.1.4 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › XH 0.51 45.0 3.68e-01 100.0% 53.3%
4185103 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.51 42.0 4.13e-01 94.6% 93.3%