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MN047793.1__QDJ96273.1__Xoosp13_86__00086

Bact-Vir

MN047793.1__QDJ96273.1__Xoosp13_86__00086

Identity

Accession:
MN047793 ↗
Kingdom:
phage

Quality

61.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_Xoo-sp13

TaxID: 2591401

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-99
PDB
Domain cluster: rep: MF001358.1__ASZ76771.1__X__00105__D7-99
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.71 56.0 5.75e-01 100.0% 88.5%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.68 55.0 5.62e-01 100.0% 89.9%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.67 56.0 5.76e-01 100.0% 93.3%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.66 39.0 2.94e-01 100.0% 23.8%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.66 51.0 5.35e-01 98.9% 89.5%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 42.0 3.82e-01 100.0% 49.6%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 44.0 3.89e-01 100.0% 48.5%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 38.0 2.53e-01 81.7% 14.2%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.64 50.0 4.99e-01 100.0% 81.1%
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.63 53.0 5.32e-01 100.0% 89.4%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 38.0 3.74e-01 96.8% 56.7%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 39.0 3.40e-01 91.4% 41.1%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.62 50.0 5.14e-01 100.0% 92.0%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 37.0 2.55e-01 100.0% 17.1%
1c3qA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 40.0 2.96e-01 75.3% 93.0%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 39.0 3.66e-01 100.0% 64.1%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.51 40.0 2.92e-01 86.0% 68.2%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 38.0 3.06e-01 86.0% 90.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5061645 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.77 50.0 5.87e-01 98.9% 98.4%
3944258 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.76 68.0 6.61e-01 100.0% 90.0%
164520 5.1.3.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mala_s_1-like 0.72 41.0 2.78e-01 100.0% 15.6%
4887373 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.72 57.0 6.13e-01 100.0% 97.5%
4966488 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.72 53.0 5.79e-01 100.0% 96.0%
3399270 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.72 45.0 4.07e-01 100.0% 47.2%
4941220 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.72 54.0 5.85e-01 100.0% 92.5%
5071213 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.71 55.0 5.84e-01 100.0% 95.0%
4966674 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.70 54.0 5.61e-01 100.0% 88.2%
4928181 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.70 53.0 5.58e-01 100.0% 87.1%
5014147 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.69 54.0 5.79e-01 100.0% 96.2%
5080427 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.69 52.0 5.55e-01 100.0% 92.5%
4984297 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.68 54.0 5.48e-01 100.0% 86.7%
138730 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.68 55.0 5.62e-01 100.0% 89.9%
4999510 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.68 53.0 5.52e-01 100.0% 90.6%
5063859 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.68 52.0 5.57e-01 100.0% 95.0%
5029202 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.67 51.0 5.30e-01 100.0% 87.1%
5061910 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.67 50.0 5.45e-01 97.8% 97.3%
4967722 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.67 51.0 5.41e-01 98.9% 93.8%
5014619 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.66 51.0 5.45e-01 100.0% 95.0%
3271931 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 44.0 3.83e-01 100.0% 45.9%
5078519 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.66 57.0 5.74e-01 100.0% 91.6%
169853 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.66 51.0 5.34e-01 98.9% 89.4%
4962176 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.66 52.0 5.58e-01 100.0% 97.5%
3559299 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 45.0 3.98e-01 100.0% 49.2%
4968316 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.66 53.0 5.41e-01 100.0% 89.8%
5029836 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.66 49.0 5.27e-01 100.0% 92.5%
4969644 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.66 56.0 5.77e-01 100.0% 95.6%
3635615 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 46.0 3.65e-01 100.0% 36.8%
5005256 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.65 52.0 5.39e-01 100.0% 92.9%
3395219 4312.2.1.1 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like › TrmO_C 0.65 47.0 5.13e-01 98.9% 93.3%
5007064 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.64 48.0 5.28e-01 100.0% 98.7%
3271309 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.64 42.0 3.82e-01 100.0% 49.6%
3602698 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.64 51.0 5.35e-01 100.0% 94.1%
3972934 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.64 57.0 5.50e-01 98.9% 86.7%
4933908 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.64 51.0 5.37e-01 100.0% 95.3%
4966983 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.64 50.0 5.37e-01 100.0% 98.8%
5007067 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.63 53.0 5.45e-01 100.0% 94.4%
5031617 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.63 50.0 5.28e-01 98.9% 98.8%
5018720 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.63 49.0 5.15e-01 100.0% 92.9%
3629728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 3.87e-01 100.0% 50.4%
5052823 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.62 53.0 5.34e-01 100.0% 92.6%
3583260 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.61 37.0 3.42e-01 100.0% 47.8%
3489979 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 41.0 3.17e-01 100.0% 31.2%
3885558 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 46.0 3.94e-01 100.0% 52.1%
3485974 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 41.0 3.81e-01 100.0% 54.2%
3586933 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.61 54.0 5.43e-01 98.9% 96.8%
3481296 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 41.0 3.69e-01 100.0% 50.0%
5082625 4312.1.1.7 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › HigB_toxin 0.59 49.0 5.00e-01 100.0% 93.3%
3928216 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.57e-01 100.0% 49.2%
5011826 5.1.4.24 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBP56 0.58 41.0 2.61e-01 100.0% 15.0%
3977677 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.57 32.0 3.96e-01 97.8% 94.5%
3485547 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.77e-01 100.0% 48.2%
3212938 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 34.0 2.44e-01 100.0% 20.4%
4944313 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.39e-01 100.0% 51.1%
3621277 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.31e-01 100.0% 45.8%
3717900 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 36.0 2.39e-01 100.0% 16.3%
4928701 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 39.0 3.79e-01 100.0% 74.3%
5063099 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.50 38.0 3.22e-01 82.8% 78.2%
D2 medium residues 109-180
PDB