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MN047793.1__QDJ96454.1__Xoosp13_268__00268
Bact-VirMN047793.1__QDJ96454.1__Xoosp13_268__00268
Identity
- Accession:
- MN047793 ↗
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-96
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08719.18 best | NADAR | 48.9 | 1.20e-12 | 100.0% | 47.2% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8bauA01 | 1.10.357.40 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like | 0.92 | 86.0 | 6.13e-01 | 98.6% | 54.7% |
| 3fhnA05 | 1.10.10.2270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dsl1p vesicle tethering complex, Tip20p subunit, domain E | 0.63 | 50.0 | 5.20e-01 | 100.0% | 92.5% |
| 2ce0A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.57 | 49.0 | 4.38e-01 | 95.8% | 97.0% |
| 1nyrA03 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 47.0 | 3.09e-01 | 97.2% | 33.5% |
| 1bdgA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 45.0 | 3.51e-01 | 95.8% | 49.4% |
| 1fuyB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 44.0 | 3.50e-01 | 100.0% | 94.5% |
| 3v2lA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 41.0 | 3.46e-01 | 85.9% | 100.0% |
| 4emeA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 43.0 | 2.82e-01 | 94.4% | 65.6% |
| 3nzpB02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.50 | 44.0 | 2.98e-01 | 98.6% | 27.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3432841 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.96 | 92.0 | 6.77e-01 | 100.0% | 44.4% |
| 3264987 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.95 | 92.0 | 6.94e-01 | 100.0% | 49.0% |
| 3705063 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.95 | 91.0 | 6.89e-01 | 100.0% | 49.0% |
| 3600506 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.95 | 91.0 | 6.81e-01 | 100.0% | 47.3% |
| 3789927 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.94 | 90.0 | 6.42e-01 | 100.0% | 45.6% |
| 7671 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.93 | 89.0 | 6.54e-01 | 100.0% | 44.4% |
| 4028386 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.93 | 88.0 | 6.37e-01 | 100.0% | 48.0% |
| 3800544 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.93 | 88.0 | 6.07e-01 | 100.0% | 52.7% |
| 3180309 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.92 | 87.0 | 6.05e-01 | 100.0% | 42.0% |
| 3279758 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.90 | 74.0 | 5.62e-01 | 97.2% | 40.9% |
| 3998019 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.89 | 83.0 | 5.99e-01 | 100.0% | 45.0% |
| 3514154 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.87 | 81.0 | 6.00e-01 | 100.0% | 73.9% |
| 3518191 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.80 | 74.0 | 5.87e-01 | 100.0% | 55.6% |
| 3685301 | 2003.1.5.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SRR1 | 0.58 | 50.0 | 3.55e-01 | 95.8% | 33.0% |
| 3669260 | 192.2.1.35 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Hobbit | 0.56 | 36.0 | 3.44e-01 | 98.6% | 54.1% |
| 3839780 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 51.0 | 3.32e-01 | 100.0% | 26.5% |
| 3822440 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.55 | 41.0 | 2.82e-01 | 95.8% | 20.7% |
| 4280491 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.55 | 42.0 | 3.76e-01 | 84.5% | 80.0% |
| 3321713 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.55 | 40.0 | 3.08e-01 | 77.5% | 77.6% |
| 3670059 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.50 | 38.0 | 3.35e-01 | 83.1% | 58.2% |
| 3176195 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.50 | 32.0 | 3.00e-01 | 97.2% | 50.0% |