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MN047793.1__QDJ96560.1__Xoosp13_374__00374

Bact-Vir

MN047793.1__QDJ96560.1__Xoosp13_374__00374

Identity

Accession:
MN047793 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_Xoo-sp13

TaxID: 2591401

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-71
PDB
Domain cluster: rep: HQ615693.1__AEC53146.1__SCRM01_200__00200__D9-70
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.78 67.0 5.43e-01 100.0% 52.3%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.78 58.0 6.01e-01 100.0% 84.5%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 58.0 5.54e-01 100.0% 69.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 5.40e-01 100.0% 68.1%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 4.56e-01 100.0% 39.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 55.0 5.57e-01 100.0% 79.0%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.70 64.0 5.45e-01 100.0% 65.7%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.67 61.0 4.57e-01 100.0% 50.0%
4ii1A01 2.30.30.1190 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.52e-01 100.0% 90.0%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 60.0 4.02e-01 100.0% 31.2%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 59.0 4.43e-01 100.0% 49.7%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 58.0 4.37e-01 100.0% 52.0%
1uapA00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 54.0 4.21e-01 92.1% 67.2%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 47.0 4.26e-01 85.7% 90.5%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 53.0 4.24e-01 100.0% 66.9%
1ir3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 45.0 3.99e-01 85.7% 92.6%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 46.0 4.00e-01 85.7% 91.7%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 49.0 4.16e-01 98.4% 59.6%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 41.0 3.49e-01 77.8% 72.7%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 2.97e-01 76.2% 54.1%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.89e-01 90.5% 59.3%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.83e-01 88.9% 58.9%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 48.0 4.16e-01 95.2% 93.8%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 43.0 3.86e-01 85.7% 84.6%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 48.0 3.04e-01 96.8% 29.9%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 43.0 3.87e-01 88.9% 91.3%
3lltA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 50.0 4.32e-01 100.0% 78.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.22e-01 100.0% 88.9%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 38.0 4.10e-01 96.8% 96.1%
4qnyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 47.0 3.78e-01 96.8% 77.3%
4wnoA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 45.0 4.10e-01 95.2% 95.4%
2rkuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 42.0 3.79e-01 88.9% 91.0%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 3.32e-01 88.9% 74.4%
2jbvA04 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.52 41.0 3.10e-01 92.1% 78.7%
3zh8C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 44.0 3.55e-01 92.1% 76.5%
3hmzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.11e-01 96.8% 66.5%
2w4oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 44.0 4.09e-01 93.7% 85.7%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.79e-01 96.8% 30.4%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.51 42.0 3.35e-01 95.2% 88.9%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 61.0 6.54e-01 100.0% 89.1%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 61.0 5.51e-01 100.0% 58.8%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 59.0 5.89e-01 100.0% 75.4%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.80 59.0 5.88e-01 100.0% 76.6%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 60.0 6.16e-01 100.0% 83.3%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 59.0 6.06e-01 100.0% 83.3%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 59.0 4.76e-01 100.0% 43.3%
3315471 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.77 59.0 5.28e-01 100.0% 60.0%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 61.0 6.07e-01 100.0% 81.5%
2675820 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.77 56.0 4.95e-01 100.0% 53.8%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 60.0 5.96e-01 100.0% 81.5%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 67.0 3.70e-01 100.0% 7.5%
5017073 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.71 54.0 4.07e-01 100.0% 34.0%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 65.0 5.24e-01 100.0% 67.8%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 57.0 5.52e-01 100.0% 80.0%
1117666 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.70 63.0 5.69e-01 100.0% 76.5%
3174446 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.68 60.0 3.68e-01 96.8% 29.0%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.24e-01 100.0% 66.7%
3836457 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.68 62.0 4.61e-01 100.0% 49.3%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 62.0 5.67e-01 100.0% 92.5%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.31e-01 100.0% 77.0%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.67 56.0 5.54e-01 100.0% 89.2%
3177842 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.66 60.0 4.82e-01 100.0% 59.2%
3172266 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 58.0 3.58e-01 96.8% 37.1%
2855767 4.1.1.4 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e 0.65 59.0 4.63e-01 100.0% 51.2%
3575867 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 59.0 4.53e-01 100.0% 53.6%
3582876 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.65 52.0 4.41e-01 100.0% 53.3%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 52.0 4.48e-01 100.0% 56.0%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.65 52.0 4.79e-01 100.0% 68.8%
3683487 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 58.0 4.19e-01 100.0% 41.7%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.65 51.0 4.62e-01 100.0% 62.2%
3612182 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 59.0 5.21e-01 100.0% 93.3%
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 51.0 4.87e-01 100.0% 74.3%
411 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.64 54.0 4.21e-01 92.1% 67.2%
3460287 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.64 57.0 4.24e-01 100.0% 45.0%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 58.0 4.99e-01 100.0% 72.6%
3330137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 57.0 4.21e-01 100.0% 44.4%
None — 0.63 54.0 3.37e-01 96.8% 27.8%
3621303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 4.44e-01 100.0% 53.8%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 5.02e-01 100.0% 75.6%
3636137 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 54.0 3.26e-01 96.8% 27.9%
3313137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 56.0 4.15e-01 100.0% 43.8%
3472188 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 54.0 3.32e-01 96.8% 35.7%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 5.07e-01 100.0% 80.0%
3853638 4.8.1.9 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_2 0.61 47.0 4.34e-01 82.5% 68.8%
3267804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.63e-01 100.0% 85.0%
4645408 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 54.0 3.77e-01 100.0% 39.0%
4017600 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 52.0 3.20e-01 96.8% 26.8%
3689627 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 52.0 3.22e-01 98.4% 29.6%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 49.0 3.59e-01 93.7% 48.3%
4493776 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 52.0 5.07e-01 98.4% 97.1%
3744039 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 51.0 3.07e-01 96.8% 24.2%
3719547 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 49.0 2.98e-01 96.8% 31.6%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 48.0 4.49e-01 100.0% 76.2%
3672372 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.56 47.0 4.48e-01 92.1% 80.0%
3783352 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 48.0 2.94e-01 96.8% 29.4%
3927335 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 48.0 3.06e-01 96.8% 28.3%
3719372 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 44.0 2.69e-01 87.3% 23.2%
4029941 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.55 44.0 2.82e-01 88.9% 27.7%
3827929 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 49.0 3.13e-01 100.0% 25.6%
3521199 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.55 45.0 3.65e-01 95.2% 61.5%
3781009 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.02e-01 95.2% 29.1%
3725498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.45e-01 100.0% 85.7%
3796020 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.54 44.0 3.55e-01 95.2% 63.0%
3606816 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 3.68e-01 90.5% 65.5%
3788607 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 46.0 2.83e-01 96.8% 28.6%
3603127 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 41.0 3.81e-01 93.7% 100.0%
432602 2.1.1.93 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Cdc13_OB4_dimer 0.52 42.0 3.32e-01 88.9% 74.4%
4198183 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 46.0 2.64e-01 96.8% 56.4%
3242949 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.51 44.0 2.98e-01 100.0% 64.9%
3617446 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 43.0 3.71e-01 96.8% 64.8%