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MN047793.1__QDJ96584.1__Xoosp13_398__00398

Bact-Vir

MN047793.1__QDJ96584.1__Xoosp13_398__00398

Identity

Accession:
MN047793 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_Xoo-sp13

TaxID: 2591401

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-73
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 39.0 2.76e-01 72.3% 84.0%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 3.07e-01 87.7% 30.8%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 42.0 3.54e-01 89.2% 92.2%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.52 40.0 3.21e-01 89.2% 75.5%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.42e-01 84.6% 70.2%
5tuuA00 1.20.140.80 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Transcription factor DP 0.51 32.0 2.57e-01 90.8% 28.5%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.51 38.0 3.25e-01 83.1% 96.4%
4tpvA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.50 40.0 2.99e-01 92.3% 93.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030325 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.63 49.0 4.15e-01 86.2% 72.2%
3629860 223.2.1.43 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_M 0.51 40.0 3.08e-01 87.7% 60.4%
3241258 4154.1.1.1 ↗ beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP 0.50 32.0 2.53e-01 92.3% 27.3%