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MN062185.1__QEG09166.1__CPT_Phriendly_014__00014
Bact-VirMN062185.1__QEG09166.1__CPT_Phriendly_014__00014
Identity
- Accession:
- MN062185 ↗
- Kingdom:
- phage
Quality
83.1
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-231
Domain cluster:
rep: IMGVR_UViG_3300005856_000098-3300005856-Ga0080005_12956230__D3-89_206-307
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13522.12 best | GATase_6 | 56.6 | 4.00e-15 | 55.9% | 95.4% |
| PF13537.12 | GATase_7 | 37.5 | 3.10e-09 | 49.3% | 89.4% |
D2
high
residues 248-348
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c48A00 | 2.40.50.70 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 50.0 | 5.88e-01 | 81.2% | 100.0% |
| 2vnuD02 | 2.40.50.700 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.69 | 48.0 | 5.39e-01 | 83.2% | 94.8% |
| 4egvA02 | 2.40.50.840 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.68 | 47.0 | 5.30e-01 | 83.2% | 97.3% |
| 6ro0F00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.67 | 54.0 | 5.54e-01 | 88.1% | 98.0% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 49.0 | 5.43e-01 | 90.1% | 100.0% |
| 3nppA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.66 | 49.0 | 5.22e-01 | 94.1% | 90.8% |
| 5gqoA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 52.0 | 5.31e-01 | 86.1% | 87.6% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 59.0 | 5.52e-01 | 100.0% | 93.5% |
| 4bwgD00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 53.0 | 5.41e-01 | 85.1% | 95.9% |
| 6ipaA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 54.0 | 4.58e-01 | 89.1% | 89.7% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 49.0 | 4.96e-01 | 81.2% | 93.1% |
| 2e8gA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 51.0 | 4.92e-01 | 91.1% | 74.1% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 53.0 | 5.16e-01 | 93.1% | 87.1% |
| 1xweA01 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 55.0 | 4.87e-01 | 94.1% | 84.6% |
| 1eujA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 53.0 | 4.55e-01 | 92.1% | 87.8% |
| 5jpnC02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 53.0 | 4.58e-01 | 91.1% | 74.5% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 50.0 | 5.00e-01 | 86.1% | 84.9% |
| 1pxfA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 53.0 | 5.14e-01 | 91.1% | 89.2% |
| 1gd7A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 52.0 | 5.15e-01 | 93.1% | 90.8% |
| 1h6hA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.62 | 44.0 | 3.92e-01 | 74.3% | 86.7% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 49.0 | 5.16e-01 | 86.1% | 97.8% |
| 1jb3A00 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 48.0 | 4.53e-01 | 88.1% | 85.0% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.60 | 43.0 | 3.96e-01 | 75.2% | 96.9% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 44.0 | 4.85e-01 | 91.1% | 100.0% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 41.0 | 4.09e-01 | 71.3% | 100.0% |
| 2qw7C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.58 | 47.0 | 4.85e-01 | 87.1% | 96.8% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.58 | 36.0 | 4.14e-01 | 86.1% | 87.3% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 35.0 | 3.26e-01 | 76.2% | 48.8% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 41.0 | 3.78e-01 | 75.2% | 94.6% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 41.0 | 3.88e-01 | 76.2% | 95.1% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.56 | 39.0 | 3.58e-01 | 74.3% | 65.2% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 34.0 | 3.88e-01 | 70.3% | 82.7% |
| 2qgyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 39.0 | 3.56e-01 | 73.3% | 85.4% |
| 4e4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 39.0 | 3.55e-01 | 75.2% | 78.0% |
| 2ar5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 40.0 | 3.79e-01 | 77.2% | 97.4% |
| 2l73A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 40.0 | 3.63e-01 | 80.2% | 84.6% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 38.0 | 3.42e-01 | 74.3% | 90.8% |
| 2mmpA00 | 3.30.160.830 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 27.0 | 3.01e-01 | 91.1% | 62.3% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 143390 | 2.24.1.1 ↗ | beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 | 0.75 | 52.0 | 5.88e-01 | 82.2% | 94.7% |
| 3970847 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 50.0 | 5.80e-01 | 88.1% | 98.6% |
| 3282644 | 2.24.1.2 ↗ | beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 | 0.72 | 44.0 | 5.32e-01 | 79.2% | 95.4% |
| 3592869 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 50.0 | 5.58e-01 | 89.1% | 100.0% |
| 3661180 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.70 | 59.0 | 5.96e-01 | 93.1% | 98.0% |
| 4038686 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.69 | 53.0 | 5.71e-01 | 89.1% | 95.3% |
| 3279764 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 47.0 | 5.45e-01 | 77.2% | 100.0% |
| 3969377 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 45.0 | 5.06e-01 | 79.2% | 90.5% |
| 3879180 | 2.1.1.170 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB2 | 0.69 | 61.0 | 5.58e-01 | 100.0% | 89.6% |
| 4129194 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.69 | 51.0 | 5.62e-01 | 89.1% | 98.8% |
| 4578663 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.69 | 39.0 | 4.59e-01 | 77.2% | 81.4% |
| 5037223 | 2.1.1.12 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e | 0.69 | 41.0 | 5.06e-01 | 70.3% | 100.0% |
| 3279044 | 2.1.1.314 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 | 0.68 | 43.0 | 5.15e-01 | 77.2% | 100.0% |
| 3882652 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 61.0 | 5.61e-01 | 100.0% | 94.6% |
| 3655845 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 57.0 | 5.91e-01 | 90.1% | 100.0% |
| 3599920 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 48.0 | 5.12e-01 | 79.2% | 87.1% |
| 4262785 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.68 | 49.0 | 5.40e-01 | 89.1% | 97.5% |
| 5054128 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 60.0 | 5.80e-01 | 100.0% | 93.9% |
| 3210912 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 52.0 | 5.55e-01 | 90.1% | 96.5% |
| 3542604 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.67 | 60.0 | 5.47e-01 | 100.0% | 91.1% |
| 4610349 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.67 | 50.0 | 5.52e-01 | 89.1% | 98.8% |
| 3657721 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.67 | 59.0 | 5.23e-01 | 99.0% | 74.0% |
| 3717380 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.67 | 49.0 | 5.37e-01 | 86.1% | 97.5% |
| 4447651 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.67 | 54.0 | 4.53e-01 | 88.1% | 84.6% |
| 4028113 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.67 | 59.0 | 5.34e-01 | 100.0% | 85.7% |
| 3675935 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.66 | 58.0 | 5.35e-01 | 100.0% | 85.2% |
| 3359808 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 58.0 | 5.42e-01 | 100.0% | 94.6% |
| 3964458 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 52.0 | 5.44e-01 | 88.1% | 95.6% |
| 3330560 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 58.0 | 5.04e-01 | 100.0% | 76.9% |
| 3301670 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.66 | 54.0 | 4.47e-01 | 89.1% | 85.5% |
| 3573804 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.65 | 54.0 | 4.50e-01 | 89.1% | 85.0% |
| 4948716 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 47.0 | 5.23e-01 | 76.2% | 100.0% |
| 3582952 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.65 | 58.0 | 5.16e-01 | 100.0% | 89.0% |
| 3658019 | 2.1.1.285 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB2 | 0.65 | 53.0 | 3.80e-01 | 89.1% | 35.0% |
| 4209483 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.65 | 53.0 | 4.50e-01 | 89.1% | 87.1% |
| 4969316 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 54.0 | 4.90e-01 | 90.1% | 71.9% |
| None | — | 0.65 | 55.0 | 3.32e-01 | 92.1% | 22.8% | |
| 5000491 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 51.0 | 4.94e-01 | 90.1% | 77.3% |
| 3506697 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 54.0 | 3.60e-01 | 92.1% | 36.5% |
| 3172156 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.64 | 50.0 | 4.99e-01 | 85.1% | 86.7% |
| 3666655 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 56.0 | 5.25e-01 | 100.0% | 97.6% |
| 4977142 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 53.0 | 5.13e-01 | 92.1% | 87.7% |
| 3737319 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.63 | 56.0 | 4.98e-01 | 99.0% | 82.1% |
| 4375712 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.63 | 53.0 | 5.05e-01 | 89.1% | 93.9% |
| 4533730 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.63 | 53.0 | 3.24e-01 | 92.1% | 22.7% |
| 4457686 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.63 | 53.0 | 5.08e-01 | 90.1% | 93.0% |
| 3630622 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 56.0 | 5.30e-01 | 100.0% | 91.7% |
| 5076884 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 55.0 | 4.96e-01 | 99.0% | 79.3% |
| 4276421 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.63 | 52.0 | 4.74e-01 | 91.1% | 72.5% |
| 3374948 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.63 | 52.0 | 5.25e-01 | 91.1% | 96.0% |
| 4207802 | 2.1.1.271 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26390 | 0.63 | 48.0 | 4.82e-01 | 82.2% | 83.0% |
| 3296674 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.63 | 55.0 | 5.43e-01 | 100.0% | 98.2% |
| 3589242 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.63 | 53.0 | 4.98e-01 | 93.1% | 79.8% |
| 4982481 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 50.0 | 5.18e-01 | 87.1% | 100.0% |
| 4400456 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.62 | 53.0 | 5.09e-01 | 93.1% | 86.1% |
| 3991931 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.62 | 55.0 | 5.22e-01 | 100.0% | 90.0% |
| 4490344 | 2.1.1.271 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26390 | 0.62 | 47.0 | 4.71e-01 | 82.2% | 80.0% |
| 4001702 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 53.0 | 5.09e-01 | 96.0% | 95.7% |
| 6286 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.62 | 44.0 | 3.92e-01 | 74.3% | 86.7% |
| 3654541 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.61 | 55.0 | 5.36e-01 | 100.0% | 97.3% |
| 3574444 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 51.0 | 3.33e-01 | 92.1% | 29.9% |
| 3791987 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.61 | 52.0 | 5.02e-01 | 96.0% | 96.5% |
| 3230872 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 53.0 | 4.78e-01 | 99.0% | 80.0% |
| 4033192 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 52.0 | 4.77e-01 | 94.1% | 86.9% |
| 3664617 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.59 | 45.0 | 4.86e-01 | 81.2% | 95.3% |
| 3589918 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.59 | 50.0 | 4.73e-01 | 92.1% | 91.7% |
| 3257603 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 42.0 | 3.96e-01 | 73.3% | 95.0% |
| 3197575 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.58 | 42.0 | 4.44e-01 | 77.2% | 86.7% |
| 3518490 | 2.1.1.110 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BRCA2DBD_OB2 | 0.58 | 50.0 | 4.86e-01 | 100.0% | 93.9% |
| 3855663 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.57 | 42.0 | 3.87e-01 | 76.2% | 98.5% |
| 5006784 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.55 | 44.0 | 4.56e-01 | 88.1% | 100.0% |
| 3862290 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 40.0 | 3.53e-01 | 77.2% | 80.0% |
| 4320111 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.54 | 39.0 | 3.98e-01 | 77.2% | 95.0% |
| 3506301 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.53 | 45.0 | 3.72e-01 | 95.0% | 88.1% |
D3
high
residues 369-436
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ecjA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.71 | 41.0 | 4.37e-01 | 70.6% | 65.5% |
| 2dloA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.69 | 47.0 | 4.50e-01 | 86.8% | 60.5% |
| 4wz0A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 46.0 | 3.97e-01 | 82.4% | 54.1% |
| 2darA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.59 | 46.0 | 4.59e-01 | 85.3% | 94.4% |
| 2miqA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 37.0 | 3.32e-01 | 73.5% | 45.7% |
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 24.0 | 3.26e-01 | 86.8% | 82.4% |
| 3ihpA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 37.0 | 3.11e-01 | 80.9% | 42.2% |
| 3v43A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 41.0 | 3.44e-01 | 82.4% | 64.3% |
| 2ysmA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 40.0 | 3.44e-01 | 83.8% | 56.8% |
| 7zj3D01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 33.0 | 3.20e-01 | 73.5% | 53.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3669337 | 376.1.2.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-RING_11 | 0.74 | 49.0 | 4.93e-01 | 88.2% | 67.1% |
| 3993815 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.73 | 41.0 | 3.62e-01 | 70.6% | 38.0% |
| 5076504 | 376.1.1.183 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Prok-RING_1 | 0.72 | 48.0 | 5.42e-01 | 85.3% | 94.0% |
| 3183301 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.72 | 46.0 | 5.04e-01 | 88.2% | 80.0% |
| 4945028 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 51.0 | 4.97e-01 | 88.2% | 70.3% |
| 3315604 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.70 | 47.0 | 4.84e-01 | 89.7% | 73.8% |
| 4970980 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 44.0 | 4.57e-01 | 70.6% | 69.8% |
| 3380774 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.69 | 48.0 | 4.98e-01 | 89.7% | 79.4% |
| 3194224 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.68 | 47.0 | 4.73e-01 | 83.8% | 71.4% |
| 3677216 | 376.1.1.40 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 | 0.67 | 46.0 | 4.89e-01 | 77.9% | 81.7% |
| 3346431 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.66 | 46.0 | 4.52e-01 | 89.7% | 68.0% |
| 3627614 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.65 | 41.0 | 4.32e-01 | 83.8% | 71.7% |
| 3609616 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 46.0 | 3.90e-01 | 83.8% | 44.7% |
| 4977347 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 52.0 | 4.88e-01 | 88.2% | 70.6% |
| 3688776 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 49.0 | 4.69e-01 | 89.7% | 72.5% |
| 3502501 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.63 | 49.0 | 4.78e-01 | 85.3% | 81.3% |
| 3413480 | 375.1.1.233 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_IFT122_C | 0.62 | 42.0 | 2.87e-01 | 72.1% | 37.3% |
| 3999619 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 42.0 | 4.77e-01 | 70.6% | 98.0% |
| 3554999 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 48.0 | 4.73e-01 | 86.8% | 82.7% |
| 3465532 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.61 | 49.0 | 4.86e-01 | 91.2% | 85.7% |
| 3883402 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 41.0 | 2.41e-01 | 72.1% | 18.7% |
| 3268433 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.60 | 45.0 | 4.35e-01 | 89.7% | 71.2% |
| 3994024 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 39.0 | 3.95e-01 | 75.0% | 67.1% |
| 3439077 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 41.0 | 3.68e-01 | 83.8% | 51.6% |
| 3427984 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 39.0 | 3.52e-01 | 83.8% | 48.4% |
| 3624932 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.59 | 45.0 | 4.60e-01 | 82.4% | 83.1% |
| 3439078 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.58 | 40.0 | 3.81e-01 | 83.8% | 61.3% |
| 5075724 | 376.1.1.181 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zn_Ribbon_1 | 0.57 | 44.0 | 4.68e-01 | 83.8% | 95.0% |
| 3677066 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.57 | 45.0 | 4.32e-01 | 91.2% | 73.8% |
| 3498867 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 46.0 | 4.12e-01 | 91.2% | 80.0% |
| 3684414 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.56 | 44.0 | 4.26e-01 | 89.7% | 75.0% |
| 4023305 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.56 | 49.0 | 3.91e-01 | 100.0% | 66.4% |
| 3484139 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 36.0 | 3.04e-01 | 80.9% | 37.6% |
| 3219830 | 376.1.3.11 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 | 0.54 | 48.0 | 3.96e-01 | 98.5% | 65.8% |
| 3780266 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.54 | 40.0 | 3.69e-01 | 82.4% | 78.9% |
| 3623052 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.54 | 41.0 | 3.49e-01 | 83.8% | 49.2% |
| 3181604 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.54 | 45.0 | 4.06e-01 | 91.2% | 84.2% |
| 2409922 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.52 | 40.0 | 3.78e-01 | 83.8% | 96.4% |
| 3171690 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.52 | 40.0 | 3.72e-01 | 82.4% | 83.5% |