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MN062185.1__QEG09198.1__CPT_Phriendly_046__00046
Bact-VirMN062185.1__QEG09198.1__CPT_Phriendly_046__00046
Identity
- Accession:
- MN062185 ↗
- Kingdom:
- phage
Quality
41.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 352-414
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.68 | 58.0 | 4.49e-01 | 95.2% | 96.4% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.67 | 40.0 | 4.43e-01 | 76.2% | 77.1% |
| 2vsqA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.66 | 53.0 | 3.56e-01 | 87.3% | 38.9% |
| 3l5kA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 43.0 | 4.29e-01 | 76.2% | 66.2% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 48.0 | 3.59e-01 | 81.0% | 77.3% |
| 1fshA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 43.0 | 3.87e-01 | 73.0% | 56.4% |
| 3ufeA02 | 1.20.58.1950 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 45.0 | 4.86e-01 | 77.8% | 94.3% |
| 4cmyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 47.0 | 3.46e-01 | 81.0% | 74.8% |
| 4i2oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 40.0 | 3.67e-01 | 90.5% | 51.2% |
| 2j1oA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 42.0 | 2.84e-01 | 71.4% | 51.4% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.61 | 49.0 | 4.54e-01 | 88.9% | 69.1% |
| 2r5uC00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.60 | 53.0 | 4.02e-01 | 95.2% | 47.1% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 41.0 | 2.88e-01 | 73.0% | 49.1% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 40.0 | 2.97e-01 | 73.0% | 69.4% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 3.87e-01 | 76.2% | 55.8% |
| 3edpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 38.0 | 3.58e-01 | 73.0% | 53.9% |
| 4tv7D01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 39.0 | 3.51e-01 | 76.2% | 49.4% |
| 1stzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.67e-01 | 76.2% | 52.9% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 41.0 | 3.94e-01 | 76.2% | 80.8% |
| 3f6oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 38.0 | 3.40e-01 | 76.2% | 48.4% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 39.0 | 3.36e-01 | 73.0% | 48.6% |
| 7bqiA01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.56 | 47.0 | 3.64e-01 | 95.2% | 42.4% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 39.0 | 3.82e-01 | 88.9% | 65.3% |
| 4jqfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 3.63e-01 | 71.4% | 61.6% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.55 | 41.0 | 3.59e-01 | 82.5% | 82.8% |
| 4dbgB02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 44.0 | 4.44e-01 | 98.4% | 100.0% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.54 | 40.0 | 3.14e-01 | 81.0% | 94.5% |
| 3ikhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 45.0 | 3.04e-01 | 100.0% | 34.6% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.37e-01 | 77.8% | 48.6% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.53 | 36.0 | 3.31e-01 | 73.0% | 48.9% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.67e-01 | 76.2% | 66.7% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 40.0 | 4.19e-01 | 85.7% | 91.2% |
| 1nu7D02 | 1.20.120.760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2 | 0.52 | 43.0 | 3.42e-01 | 90.5% | 89.1% |
| 4s2rQ03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.52 | 38.0 | 2.46e-01 | 77.8% | 89.9% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.15e-01 | 76.2% | 52.4% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.51 | 36.0 | 3.13e-01 | 76.2% | 47.1% |
| 3nrkA01 | 1.10.4030.10 | Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain | 0.51 | 43.0 | 3.07e-01 | 96.8% | 82.2% |
| 3lcrB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 38.0 | 2.52e-01 | 81.0% | 73.0% |
| 5cqfA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 37.0 | 2.36e-01 | 85.7% | 83.1% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3430842 | 103.1.1.39 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF1421 | 0.91 | 69.0 | 7.37e-01 | 81.0% | 90.9% |
| 4610458 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.75 | 52.0 | 5.70e-01 | 73.0% | 100.0% |
| 4283232 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.72 | 52.0 | 5.35e-01 | 77.8% | 83.3% |
| 4933655 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.71 | 50.0 | 5.26e-01 | 77.8% | 85.5% |
| 4942322 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.70 | 51.0 | 3.63e-01 | 77.8% | 77.8% |
| 4994844 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.70 | 48.0 | 3.30e-01 | 77.8% | 20.9% |
| 4991630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 47.0 | 4.80e-01 | 71.4% | 85.0% |
| 4404878 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.66 | 49.0 | 5.02e-01 | 81.0% | 86.7% |
| 3322329 | 3238.1.1.0 ↗ | alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF | 0.65 | 50.0 | 3.48e-01 | 85.7% | 45.8% |
| 4566012 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.64 | 44.0 | 3.14e-01 | 73.0% | 54.0% |
| 3493350 | 101.1.2.265 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stork_head | 0.64 | 44.0 | 3.77e-01 | 71.4% | 45.0% |
| 4341780 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.63 | 48.0 | 4.81e-01 | 98.4% | 84.6% |
| 4999932 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 42.0 | 3.70e-01 | 92.1% | 48.9% |
| 4274627 | 101.1.1.266 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut | 0.62 | 36.0 | 3.75e-01 | 76.2% | 61.7% |
| 3883209 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.62 | 45.0 | 3.04e-01 | 77.8% | 43.2% |
| 5023135 | 101.1.2.97 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPA_C | 0.62 | 40.0 | 3.79e-01 | 85.7% | 54.7% |
| 3609557 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.61 | 42.0 | 3.71e-01 | 77.8% | 47.4% |
| 5058284 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.60 | 43.0 | 3.11e-01 | 82.5% | 23.8% |
| 4928633 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.60 | 45.0 | 3.73e-01 | 79.4% | 68.6% |
| 3515490 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 41.0 | 3.84e-01 | 85.7% | 60.0% |
| 4997429 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 39.0 | 4.19e-01 | 73.0% | 88.0% |
| 3589232 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 53.0 | 3.11e-01 | 96.8% | 15.1% |
| 3239312 | 101.1.1.264 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SPK | 0.58 | 40.0 | 3.46e-01 | 73.0% | 73.4% |
| 3979831 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 44.0 | 4.40e-01 | 85.7% | 96.9% |
| 4961824 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 40.0 | 4.40e-01 | 88.9% | 88.0% |
| 4926980 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 41.0 | 3.82e-01 | 90.5% | 58.7% |
| 4129764 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.57 | 40.0 | 3.68e-01 | 76.2% | 56.2% |
| 3987997 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 3.79e-01 | 77.8% | 62.7% |
| 3613393 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 3.78e-01 | 76.2% | 58.7% |
| 4981596 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 3.86e-01 | 76.2% | 65.7% |
| 3594128 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 38.0 | 3.43e-01 | 76.2% | 51.8% |
| 4022896 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 39.0 | 2.89e-01 | 74.6% | 29.2% |
| 4393250 | 101.1.2.107 ↗ | alpha arrays › HTH › HTH › winged helix domain › STN1_2 | 0.56 | 39.0 | 3.75e-01 | 74.6% | 62.7% |
| 4970543 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 3.89e-01 | 84.1% | 65.3% |
| 5021067 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 3.71e-01 | 90.5% | 51.4% |
| 3718897 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 3.66e-01 | 76.2% | 62.9% |
| 199236 | 545.1.2.1 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain › PfUIS3 | 0.55 | 41.0 | 3.59e-01 | 82.5% | 82.8% |
| 3593172 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 37.0 | 3.49e-01 | 73.0% | 54.1% |
| 5047202 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.80e-01 | 74.6% | 65.7% |
| 4346261 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.54 | 46.0 | 2.99e-01 | 100.0% | 87.5% |
| 4975263 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.54 | 39.0 | 3.54e-01 | 74.6% | 54.1% |
| 4959343 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.54 | 36.0 | 3.37e-01 | 73.0% | 53.3% |
| 4941699 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.73e-01 | 76.2% | 68.0% |
| 5030252 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 37.0 | 3.23e-01 | 73.0% | 49.0% |
| 5031078 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.53 | 38.0 | 3.28e-01 | 74.6% | 50.0% |
| 4967950 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.40e-01 | 74.6% | 63.3% |
| 5023957 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.53 | 39.0 | 3.60e-01 | 76.2% | 65.0% |
| 5074949 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 36.0 | 3.24e-01 | 73.0% | 51.1% |
| 4979491 | 101.1.2.894 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2240 | 0.52 | 41.0 | 3.98e-01 | 90.5% | 75.7% |
| 4026717 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.63e-01 | 74.6% | 71.4% |
| 3486484 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 42.0 | 2.91e-01 | 96.8% | 85.2% |
| 3416926 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.51 | 37.0 | 2.71e-01 | 76.2% | 75.3% |
| 4977905 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 37.0 | 3.56e-01 | 74.6% | 65.7% |
| 4957643 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.50 | 38.0 | 2.51e-01 | 82.5% | 27.2% |
D2
medium
residues 85-168
D3
medium
residues 263-343