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MN062188.1__QEG09447.1__CPT_Saba_074__00074
Bact-VirMN062188.1__QEG09447.1__CPT_Saba_074__00074
Identity
- Accession:
- MN062188 ↗
- Kingdom:
- phage
Quality
65.7
mean pLDDT
Taxonomy
TaxID: 2596672
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 128-180
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.76 | 67.0 | 5.68e-01 | 100.0% | 65.2% |
| 2nr7A00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.73 | 63.0 | 4.30e-01 | 100.0% | 51.5% |
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.71 | 61.0 | 4.25e-01 | 100.0% | 36.4% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.68 | 60.0 | 5.59e-01 | 100.0% | 86.4% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 57.0 | 5.04e-01 | 100.0% | 74.1% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.65 | 47.0 | 3.97e-01 | 75.5% | 49.4% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 42.0 | 3.89e-01 | 73.6% | 51.5% |
| 3ihvA03 | 1.25.40.900 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 52.0 | 3.87e-01 | 100.0% | 35.3% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.62 | 44.0 | 4.08e-01 | 75.5% | 61.8% |
| 2yy5A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.62 | 50.0 | 4.03e-01 | 100.0% | 43.7% |
| 2oyhA00 | 1.20.5.50 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 35.0 | 3.26e-01 | 71.7% | 48.4% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 38.0 | 3.05e-01 | 90.6% | 33.3% |
| 3vygE00 | 1.10.472.20 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit | 0.57 | 48.0 | 3.56e-01 | 100.0% | 38.4% |
| 3cxbA01 | 3.30.2440.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA | 0.57 | 44.0 | 3.46e-01 | 86.8% | 41.7% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.56 | 45.0 | 4.46e-01 | 100.0% | 100.0% |
| 3ungC02 | 1.10.10.1720 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CRISPR-Cas system, Cmr2 subunit, D2 domain, helical bundle | 0.56 | 42.0 | 3.76e-01 | 83.0% | 85.9% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.56 | 39.0 | 3.36e-01 | 73.6% | 98.8% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 38.0 | 3.33e-01 | 73.6% | 47.5% |
| 7ys6A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 44.0 | 2.96e-01 | 100.0% | 36.0% |
| 1yz6A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.55 | 46.0 | 4.03e-01 | 100.0% | 79.3% |
| 5zorA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 44.0 | 4.01e-01 | 94.3% | 84.9% |
| 7wu8B01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.53 | 45.0 | 3.99e-01 | 98.1% | 67.1% |
| 6ll8A01 | 3.90.1640.10 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) | 0.52 | 44.0 | 3.13e-01 | 100.0% | 62.4% |
| 4fqgB03 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.52 | 37.0 | 3.53e-01 | 79.2% | 66.7% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.52 | 40.0 | 3.21e-01 | 88.7% | 48.7% |
| 2qm8A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.52 | 39.0 | 3.77e-01 | 90.6% | 70.8% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.51 | 44.0 | 2.72e-01 | 98.1% | 51.8% |
| 6wv5A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.51 | 43.0 | 3.29e-01 | 100.0% | 72.8% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.50 | 35.0 | 3.18e-01 | 86.8% | 50.6% |
| 2ah5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 40.0 | 3.88e-01 | 100.0% | 78.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4401280 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.76 | 66.0 | 6.06e-01 | 98.1% | 85.7% |
| 1721530 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.70 | 60.0 | 5.37e-01 | 100.0% | 76.9% |
| 3210776 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.65 | 55.0 | 4.64e-01 | 100.0% | 60.0% |
| 4928675 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 51.0 | 4.68e-01 | 100.0% | 66.7% |
| 3800788 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.62 | 39.0 | 3.48e-01 | 86.8% | 42.5% |
| 4957947 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 48.0 | 4.85e-01 | 92.5% | 87.3% |
| 3471579 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.60 | 41.0 | 3.74e-01 | 73.6% | 53.3% |
| 4928406 | 622.4.1.26 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA | 0.59 | 40.0 | 3.20e-01 | 73.6% | 35.2% |
| 3591661 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 48.0 | 4.28e-01 | 100.0% | 65.9% |
| 3989722 | 632.24.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain | 0.59 | 48.0 | 4.58e-01 | 98.1% | 90.8% |
| 4981747 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.59 | 47.0 | 4.57e-01 | 100.0% | 86.2% |
| 3233589 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 40.0 | 3.64e-01 | 73.6% | 97.3% |
| 3364683 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.58 | 48.0 | 4.19e-01 | 100.0% | 97.8% |
| 3726531 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.58 | 50.0 | 3.71e-01 | 98.1% | 39.3% |
| 3428082 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.56 | 51.0 | 4.50e-01 | 100.0% | 73.3% |
| 3491972 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.56 | 42.0 | 3.88e-01 | 88.7% | 77.3% |
| 4969424 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.56 | 46.0 | 4.25e-01 | 100.0% | 85.3% |
| 4634269 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.55 | 40.0 | 2.82e-01 | 83.0% | 79.0% |
| 3607008 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.55 | 38.0 | 3.16e-01 | 73.6% | 45.3% |
| 3186255 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.55 | 44.0 | 2.83e-01 | 100.0% | 40.3% |
| 4934138 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.54 | 46.0 | 4.54e-01 | 100.0% | 89.1% |
| 3658922 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.54 | 41.0 | 3.63e-01 | 98.1% | 55.3% |
| 3285411 | 1016.1.1.0 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 | 0.53 | 41.0 | 3.10e-01 | 92.5% | 60.7% |
D2
medium
residues 9-90
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.58 | 47.0 | 3.46e-01 | 86.6% | 81.9% |