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MN082625.1__QDH50347.1__KAREZI_26__00026

Bact-Vir

MN082625.1__QDH50347.1__KAREZI_26__00026

Identity

Accession:
MN082625 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salasmaviridae› Karezivirus› Bacillus_phage_Karezi

TaxID: 2591398

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 91-144
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06720.18 best Phi-29_GP16_7 64.2 1.60e-17 100.0% 55.3%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bnkA00 1.10.8.600 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like 0.96 88.0 8.26e-01 100.0% 82.8%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 50.0 4.59e-01 70.4% 97.1%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.73 62.0 5.68e-01 98.1% 72.2%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.72 48.0 4.15e-01 70.4% 49.4%
1sxjD02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.71 59.0 5.48e-01 98.1% 74.3%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 34.0 3.54e-01 79.6% 52.0%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 46.0 3.16e-01 72.2% 20.1%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 57.0 5.09e-01 98.1% 63.9%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 57.0 5.07e-01 98.1% 63.9%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 54.0 5.00e-01 100.0% 67.1%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 45.0 4.21e-01 72.2% 98.5%
3ip4C01 1.10.20.60 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Glu-tRNAGln amidotransferase C subunit, N-terminal domain 0.64 44.0 4.77e-01 72.2% 90.9%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.63 53.0 3.84e-01 92.6% 36.4%
1dgnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.61 49.0 4.18e-01 88.9% 57.3%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 3.86e-01 79.6% 73.9%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 47.0 4.40e-01 96.3% 68.5%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.66e-01 74.1% 82.4%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 46.0 3.53e-01 100.0% 35.4%
2yc3A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 48.0 3.20e-01 94.4% 72.1%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.55 40.0 2.46e-01 75.9% 16.6%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 42.0 3.84e-01 92.6% 75.0%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 42.0 3.63e-01 92.6% 74.0%
2is6A04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.54 41.0 3.13e-01 92.6% 31.7%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 38.0 3.85e-01 94.4% 77.8%
4i5jA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 43.0 3.23e-01 98.1% 88.5%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 39.0 3.61e-01 81.5% 93.1%
1g55A01 3.90.120.10 Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 0.53 37.0 2.94e-01 77.8% 51.5%
1khyD00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.52 41.0 3.27e-01 100.0% 89.9%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 44.0 3.89e-01 92.6% 88.3%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 40.0 3.76e-01 94.4% 79.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2385 4298.1.1.1 ↗ alpha arrays › Phage replication organizer domain › Phage replication organizer domain › Phage replication organizer domain › Phi-29_GP16_7 0.97 90.0 8.48e-01 100.0% 84.1%
4179006 589.1.2.1 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.82 45.0 3.12e-01 100.0% 18.2%
4077605 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.76 59.0 5.83e-01 90.7% 79.7%
3057925 102.1.3.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Mab-21_C 0.75 63.0 5.39e-01 96.3% 78.7%
4117160 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 63.0 5.55e-01 98.1% 65.0%
3838403 327.10.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.73 62.0 5.49e-01 98.1% 65.0%
4204950 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 62.0 5.46e-01 98.1% 65.0%
4982784 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.73 62.0 6.00e-01 98.1% 86.7%
4246144 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 61.0 5.43e-01 98.1% 65.0%
4121495 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 61.0 5.52e-01 98.1% 69.3%
3385989 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.71 60.0 5.57e-01 98.1% 74.3%
4089409 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 60.0 5.32e-01 98.1% 65.0%
4594380 148.1.3.49 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid 0.70 59.0 5.26e-01 98.1% 65.0%
5014348 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.70 57.0 5.55e-01 94.4% 83.3%
4374427 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.70 58.0 5.10e-01 96.3% 62.7%
4527373 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 60.0 5.31e-01 100.0% 77.5%
3895727 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.69 51.0 5.23e-01 81.5% 96.0%
4965689 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 53.0 5.23e-01 90.7% 80.0%
4929054 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.68 49.0 3.38e-01 83.3% 21.5%
3519328 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.68 57.0 4.82e-01 98.1% 55.8%
3611993 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.67 57.0 5.30e-01 98.1% 75.7%
4046331 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 58.0 5.21e-01 98.1% 70.7%
159498 108.1.1.41 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › MTIP_N 0.67 50.0 5.19e-01 83.3% 93.8%
4060907 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 56.0 5.02e-01 98.1% 66.3%
4319059 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.66 56.0 5.40e-01 100.0% 85.7%
4206573 148.1.3.39 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › HolB_lid 0.66 48.0 5.09e-01 81.5% 100.0%
3886972 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 53.0 5.10e-01 96.3% 81.5%
3267034 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 38.0 3.93e-01 72.2% 62.0%
4941193 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 54.0 4.60e-01 92.6% 80.0%
3223445 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.64 54.0 4.41e-01 98.1% 54.3%
3603655 2004.1.1.66 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 0.63 48.0 3.12e-01 90.7% 16.3%
3219809 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.63 52.0 4.17e-01 94.4% 84.5%
4968057 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.62 53.0 4.77e-01 96.3% 73.3%
3602256 101.1.2.542 ↗ alpha arrays › HTH › HTH › winged helix domain › ATPase_2 0.62 50.0 4.54e-01 100.0% 66.7%
4990055 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 43.0 4.36e-01 77.8% 81.8%
3471028 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.61 49.0 4.07e-01 90.7% 74.0%
4383903 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.60 46.0 4.33e-01 88.9% 84.3%
2627770 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.60 44.0 4.08e-01 77.8% 86.8%
3186890 103.1.1.58 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_Rad5 0.56 44.0 4.52e-01 94.4% 98.0%
1551399 4982.2.1.1 ↗ alpha arrays › KaiA/RbsU domain-like › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mrpl_C 0.56 43.0 3.45e-01 81.5% 88.2%
5026703 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.55 46.0 2.83e-01 98.1% 15.3%
3518121 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.55 44.0 3.54e-01 92.6% 63.5%
3274234 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 37.0 3.76e-01 74.1% 94.5%
3617137 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 36.0 3.62e-01 72.2% 76.4%
3965373 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.53 46.0 4.23e-01 96.3% 75.7%
5024667 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 41.0 2.81e-01 98.1% 35.5%