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MN087708.1__QEA10616.1__X__00137

Bact-Vir

MN087708.1__QEA10616.1__X__00137

Identity

Accession:
MN087708 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Kanagawavirus› Enterobacter_phage_vB_EhoM-IME523

TaxID: 2596709

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-92
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.66 53.0 4.40e-01 90.2% 93.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 37.0 3.68e-01 100.0% 59.7%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.59 33.0 3.85e-01 100.0% 82.1%
1vkyB01 3.40.1780.10 Alpha Beta › 3-Layer(aba) Sandwich › QueA-like › QueA-like 0.58 50.0 3.51e-01 100.0% 31.1%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 40.0 3.39e-01 75.4% 90.6%
4dw8A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 40.0 3.37e-01 75.4% 91.5%
2jigA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.56 46.0 3.21e-01 91.8% 90.3%
1qh5A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 45.0 3.08e-01 100.0% 80.4%
1xm8A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 45.0 3.08e-01 100.0% 79.9%
4z1xA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 39.0 3.04e-01 82.0% 39.2%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.46e-01 88.5% 65.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933654 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 34.0 3.83e-01 98.4% 64.4%
3716190 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 3.99e-01 95.1% 51.9%
3977078 4013.1.1.1 ↗ a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth 0.59 52.0 3.59e-01 100.0% 39.1%
3181086 568.1.1.0 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related 0.59 39.0 3.93e-01 86.9% 68.3%
4025199 306.7.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain 0.59 48.0 3.80e-01 96.7% 86.9%
3958148 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 34.0 2.65e-01 77.0% 26.7%
3386803 1.1.7.79 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.58 49.0 4.17e-01 93.4% 75.0%
3608807 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.25e-01 100.0% 68.6%
4197446 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.56 38.0 3.00e-01 72.1% 36.3%
4321117 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.56 48.0 3.41e-01 100.0% 54.6%