←Back to structures

MN090155.1__QDH94217.1__X__00014

Bact-Vir

MN090155.1__QDH94217.1__X__00014

Identity

Accession:
MN090155 ↗
Kingdom:
phage

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Baihuvirus› Escherichia_phage_vB_EcoS_PHB17

TaxID: 2591407

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-74
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q1uA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 49.0 4.09e-01 93.0% 97.8%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.60 48.0 4.21e-01 90.1% 100.0%
4kc3A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 47.0 3.90e-01 90.1% 97.8%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.59 47.0 4.28e-01 90.1% 94.0%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.48e-01 93.0% 77.6%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 40.0 3.41e-01 71.8% 68.3%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.15e-01 95.8% 79.4%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.58 48.0 4.18e-01 93.0% 96.4%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.88e-01 93.0% 98.4%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.82e-01 91.5% 65.2%
6mrc100 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.57 39.0 3.52e-01 71.8% 52.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 3.82e-01 93.0% 51.3%
1f60A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 47.0 4.14e-01 91.5% 95.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.55e-01 95.8% 81.0%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.57 45.0 3.85e-01 91.5% 94.5%
1jiwI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 4.10e-01 91.5% 92.4%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 3.95e-01 88.7% 97.3%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 37.0 4.08e-01 91.5% 94.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 3.89e-01 91.5% 73.5%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 4.06e-01 94.4% 86.1%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.76e-01 93.0% 65.2%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.68e-01 91.5% 71.1%
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 46.0 3.72e-01 97.2% 88.4%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.03e-01 91.5% 79.0%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.85e-01 91.5% 81.7%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.55 43.0 3.71e-01 100.0% 54.0%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.70e-01 90.1% 98.4%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.79e-01 91.5% 72.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 3.71e-01 91.5% 75.0%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 39.0 3.76e-01 91.5% 65.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.54 38.0 3.87e-01 91.5% 79.1%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 4.05e-01 91.5% 94.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 34.0 3.88e-01 73.2% 100.0%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.73e-01 91.5% 76.7%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.70e-01 100.0% 78.4%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 37.0 2.47e-01 84.5% 29.3%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 33.0 3.56e-01 91.5% 96.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.78e-01 91.5% 90.7%
4157284 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.57 46.0 4.13e-01 91.5% 97.1%
3718060 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.00e-01 91.5% 74.8%
3267759 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.57 45.0 3.49e-01 87.3% 68.8%
3742084 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.56 46.0 3.58e-01 93.0% 49.7%
2561188 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.56 45.0 4.11e-01 90.1% 94.8%
4483985 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.56 45.0 4.22e-01 90.1% 97.8%
5061051 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.56 44.0 3.36e-01 90.1% 78.9%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.55 46.0 4.16e-01 93.0% 83.0%
3585142 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.55 46.0 3.87e-01 91.5% 73.3%
4662758 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.74e-01 94.4% 72.9%
3700780 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.55 44.0 3.49e-01 87.3% 71.7%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.55 45.0 3.76e-01 91.5% 60.8%
3690811 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.55 44.0 3.97e-01 90.1% 80.0%
3922234 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.94e-01 94.4% 75.7%
4930956 4.33.1.0 ↗ beta barrels › SH3 0.54 45.0 4.21e-01 91.5% 76.7%
4071075 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.54 45.0 3.96e-01 91.5% 85.7%
3425872 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 42.0 3.95e-01 87.3% 82.2%
3712782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.48e-01 93.0% 61.3%
3300226 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.53 44.0 4.26e-01 91.5% 95.0%
3223257 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.53 43.0 3.76e-01 94.4% 78.3%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.53 44.0 3.77e-01 91.5% 94.8%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 36.0 3.51e-01 91.5% 65.0%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 34.0 3.57e-01 93.0% 81.7%
4256469 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.51 40.0 4.00e-01 88.7% 98.7%
5016579 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.51 41.0 4.04e-01 91.5% 98.7%
5063379 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.51 35.0 2.68e-01 93.0% 28.9%
3898170 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.50 41.0 4.08e-01 93.0% 93.3%
3587629 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 34.0 3.54e-01 93.0% 78.5%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.72e-01 91.5% 90.0%
D2 medium residues 90-130
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.82 66.0 4.94e-01 90.2% 40.4%
1m93A00 1.10.287.580 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 55.0 5.38e-01 80.5% 67.4%
3mpxA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.77 67.0 4.24e-01 100.0% 77.7%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.74 63.0 4.07e-01 100.0% 82.2%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 64.0 4.34e-01 100.0% 37.5%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 60.0 4.13e-01 95.1% 36.1%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.72 56.0 3.39e-01 90.2% 12.9%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 56.0 4.69e-01 90.2% 51.4%
8g4uA02 3.30.70.3290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 60.0 4.71e-01 97.6% 73.8%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.66 47.0 3.69e-01 82.9% 33.0%
4c3eM00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.64 52.0 3.62e-01 97.6% 51.0%
7zmgL01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 50.0 4.15e-01 100.0% 65.0%
1u97A00 1.10.287.1130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone 0.59 45.0 4.04e-01 97.6% 56.5%
3d3qB02 1.10.20.140 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.58 40.0 3.52e-01 78.0% 72.9%
2pusA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 42.0 4.02e-01 82.9% 64.2%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.55 45.0 4.33e-01 97.6% 76.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4565383 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.89 69.0 6.42e-01 82.9% 68.0%
4597007 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.87 67.0 6.56e-01 82.9% 77.8%
4544002 192.6.1.1 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.86 66.0 6.19e-01 82.9% 70.0%
3411108 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.86 69.0 4.71e-01 87.8% 29.6%
3200936 5001.1.1.85 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin 0.86 70.0 4.20e-01 87.8% 16.2%
4970593 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.85 71.0 4.27e-01 90.2% 16.4%
3397137 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.84 68.0 5.54e-01 90.2% 53.3%
5073476 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.83 69.0 4.17e-01 90.2% 17.4%
3399701 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.83 65.0 4.46e-01 87.8% 28.6%
3913004 3729.1.1.2 ↗ alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain › MREG 0.82 59.0 3.94e-01 90.2% 20.6%
4883924 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.81 66.0 5.25e-01 90.2% 46.3%
3503725 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.81 64.0 4.04e-01 87.8% 20.5%
4213046 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 65.0 5.55e-01 90.2% 56.9%
5052188 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 63.0 3.57e-01 87.8% 20.0%
3630388 109.4.1.72 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.78 55.0 3.22e-01 80.5% 9.3%
3476922 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.77 67.0 4.17e-01 100.0% 71.3%
3681637 603.1.1.5 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.76 61.0 3.99e-01 90.2% 22.9%
4541195 3755.3.1.470 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › T3SSipB 0.74 58.0 4.13e-01 90.2% 30.8%
2141380 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.71 61.0 3.84e-01 100.0% 78.4%
3702968 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 60.0 3.64e-01 100.0% 27.0%
3741939 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.70 58.0 4.72e-01 100.0% 48.2%
3601853 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.68 51.0 3.61e-01 87.8% 27.6%
3505608 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.57 40.0 3.62e-01 90.2% 86.7%