Back to structures

MN094788.1__QDH83388.1__X__00323

Bact-Vir

MN094788.1__QDH83388.1__X__00323

Identity

Accession:
MN094788 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-124
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.73 60.0 5.07e-01 90.3% 91.8%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 60.0 6.08e-01 93.1% 93.0%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.71 59.0 4.96e-01 93.1% 58.4%
1qmiA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.71 54.0 5.03e-01 81.9% 96.7%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.71 61.0 4.66e-01 97.2% 96.4%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.68 62.0 3.96e-01 100.0% 27.5%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.68 55.0 4.08e-01 88.9% 55.5%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.67 45.0 3.83e-01 72.2% 42.5%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 52.0 3.54e-01 84.7% 34.7%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 54.0 4.51e-01 90.3% 99.2%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 44.0 3.73e-01 86.1% 39.4%
4o89A02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.65 55.0 5.03e-01 93.1% 90.4%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 50.0 4.65e-01 91.7% 65.9%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 53.0 5.41e-01 90.3% 90.1%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 51.0 5.25e-01 86.1% 92.6%
1ixlA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 45.0 3.70e-01 72.2% 79.8%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.64 54.0 4.41e-01 93.1% 70.9%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 46.0 4.97e-01 83.3% 96.6%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 55.0 4.98e-01 94.4% 79.4%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.64 50.0 3.20e-01 86.1% 28.5%
2bcfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 55.0 3.81e-01 100.0% 62.5%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 52.0 3.43e-01 95.8% 36.5%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 48.0 3.23e-01 90.3% 39.0%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 44.0 3.00e-01 77.8% 31.0%
1a9xA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 48.0 3.51e-01 87.5% 77.3%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.55e-01 73.6% 54.8%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 49.0 4.77e-01 91.7% 88.6%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 48.0 3.12e-01 91.7% 32.0%
2g18I00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.59 45.0 3.18e-01 83.3% 62.6%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 3.97e-01 80.6% 85.1%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.05e-01 81.9% 89.0%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 42.0 2.89e-01 77.8% 30.1%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 3.78e-01 91.7% 43.1%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.58 46.0 3.60e-01 88.9% 44.5%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.57 47.0 3.63e-01 98.6% 68.1%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.57 49.0 3.37e-01 98.6% 92.4%
1khdD02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.57 45.0 3.26e-01 88.9% 83.0%
1zwxA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.56 41.0 2.73e-01 77.8% 55.9%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.56 43.0 3.52e-01 100.0% 41.2%
4ifdF00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.56 46.0 3.31e-01 90.3% 66.7%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.55 46.0 3.96e-01 97.2% 91.8%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 47.0 3.19e-01 100.0% 87.2%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.53 47.0 3.20e-01 98.6% 92.8%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.82e-01 97.2% 91.7%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 42.0 3.71e-01 88.9% 89.0%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 40.0 3.36e-01 88.9% 84.4%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960733 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.78 65.0 6.14e-01 90.3% 82.4%
3390537 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 52.0 3.28e-01 73.6% 16.7%
3802643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 58.0 5.33e-01 93.1% 66.3%
3436093 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 59.0 5.83e-01 93.1% 85.3%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.72 62.0 5.04e-01 94.4% 85.7%
3964085 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.71 56.0 4.66e-01 90.3% 48.5%
3730099 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 57.0 5.66e-01 91.7% 83.8%
3970647 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.70 59.0 4.40e-01 91.7% 48.6%
3503377 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 58.0 5.13e-01 93.1% 62.9%
5069695 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.69 61.0 5.33e-01 98.6% 87.2%
4040973 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.69 56.0 5.69e-01 90.3% 97.1%
4528719 4.1.1.438 beta barrels › SH3 › SH3 › SH3 › PF27440 0.68 47.0 4.99e-01 76.4% 80.0%
4366777 5.1.5.205 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF27482 0.68 56.0 3.57e-01 91.7% 23.0%
4343392 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 53.0 4.60e-01 83.3% 78.2%
4938029 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.68 52.0 4.69e-01 87.5% 60.2%
4634682 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.67 56.0 4.61e-01 91.7% 63.1%
146717 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 53.0 4.74e-01 90.3% 61.2%
4110960 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.67 53.0 4.84e-01 86.1% 95.8%
3781393 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.67 54.0 5.14e-01 88.9% 79.8%
3486144 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.67 47.0 3.04e-01 73.6% 30.2%
3571568 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.67 56.0 4.47e-01 93.1% 59.3%
3789856 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 56.0 4.84e-01 94.4% 60.9%
5009522 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 52.0 3.28e-01 100.0% 16.9%
5039841 330.1.1.36 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › ERF 0.66 50.0 4.40e-01 83.3% 61.8%
3878170 5.1.4.549 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28327 0.65 53.0 3.44e-01 88.9% 25.2%
3526118 11.1.1.810 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FGF-BP1 0.65 58.0 5.12e-01 100.0% 100.0%
4393617 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.64 55.0 4.51e-01 94.4% 64.6%
4240105 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.63 52.0 4.51e-01 91.7% 63.5%
4963369 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.63 51.0 3.89e-01 88.9% 37.6%
5044375 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.63 49.0 3.46e-01 86.1% 47.2%
4937945 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.62 50.0 4.49e-01 91.7% 62.1%
4937915 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.62 47.0 4.30e-01 93.1% 60.6%
5018204 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.61 52.0 4.03e-01 95.8% 86.7%
5019748 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 48.0 4.07e-01 87.5% 51.7%
5049477 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 44.0 4.78e-01 83.3% 91.7%
4959736 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 47.0 4.52e-01 84.7% 98.8%
3994608 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 44.0 3.19e-01 77.8% 38.6%
5040814 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.60 48.0 4.18e-01 91.7% 56.5%
3561132 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 46.0 2.66e-01 81.9% 37.1%
3675798 883.1.1.20 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_MUG190-like 0.59 49.0 3.55e-01 94.4% 66.4%
3015419 867.1.1.2 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.59 45.0 3.17e-01 83.3% 61.3%
3980114 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.59 43.0 3.36e-01 76.4% 39.3%
4002646 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 45.0 3.02e-01 80.6% 48.8%
3258377 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.58 46.0 4.30e-01 88.9% 67.8%
4883407 883.1.1.8 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Grp7_allergen 0.58 49.0 3.76e-01 98.6% 66.1%
3211840 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 42.0 3.42e-01 87.5% 40.0%
4991720 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.58 48.0 4.07e-01 94.4% 53.6%
4960871 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.57 43.0 2.98e-01 80.6% 60.0%
4962493 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.57 42.0 3.90e-01 93.1% 61.1%
5045102 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 42.0 3.93e-01 100.0% 65.3%
3968432 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 44.0 3.93e-01 90.3% 93.3%
4968485 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.54 42.0 2.73e-01 84.7% 34.7%
2639349 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.53 44.0 3.68e-01 90.3% 87.8%
3381762 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.53 48.0 3.13e-01 100.0% 60.7%
4978525 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.51 46.0 3.15e-01 100.0% 60.4%
3984778 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.51 42.0 3.10e-01 98.6% 54.8%
3233889 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 37.0 2.55e-01 77.8% 21.5%
3829651 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.50 43.0 2.99e-01 100.0% 72.9%