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MN094788.1__QDH83460.1__X__00052
Bact-VirMN094788.1__QDH83460.1__X__00052
Identity
- Accession:
- MN094788 ↗
- Kingdom:
- phage
Quality
43.2
mean pLDDT
Taxonomy
TaxID: 2591403
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-58
D2
high
residues 87-188
D3
high
residues 233-287
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.72 | 58.0 | 4.95e-01 | 90.9% | 65.2% |
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.63 | 54.0 | 3.38e-01 | 100.0% | 67.7% |
| 1mg7A01 | 3.30.70.1000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like | 0.63 | 55.0 | 3.91e-01 | 100.0% | 80.6% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.63 | 46.0 | 4.82e-01 | 94.5% | 89.8% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.61 | 52.0 | 4.10e-01 | 100.0% | 68.0% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.60 | 50.0 | 4.51e-01 | 100.0% | 91.6% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.59 | 43.0 | 4.13e-01 | 89.1% | 68.2% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.59 | 51.0 | 4.69e-01 | 100.0% | 76.4% |
| 3lqmA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 50.0 | 4.17e-01 | 100.0% | 53.9% |
| 3webA00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 50.0 | 3.85e-01 | 100.0% | 56.8% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.58 | 49.0 | 4.66e-01 | 100.0% | 82.1% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 49.0 | 4.10e-01 | 100.0% | 67.3% |
| 2r7kA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.58 | 43.0 | 4.25e-01 | 90.9% | 78.7% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.58 | 47.0 | 4.39e-01 | 100.0% | 80.3% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.57 | 48.0 | 4.18e-01 | 100.0% | 95.7% |
| 2edyA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 48.0 | 4.05e-01 | 100.0% | 53.4% |
| 2dn7A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 48.0 | 3.99e-01 | 100.0% | 51.4% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 49.0 | 3.88e-01 | 98.2% | 98.2% |
| 2ww8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 47.0 | 3.86e-01 | 100.0% | 50.9% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 46.0 | 3.38e-01 | 100.0% | 93.4% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 46.0 | 3.96e-01 | 100.0% | 93.6% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 47.0 | 4.00e-01 | 100.0% | 91.5% |
| 3c8cB02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 37.0 | 3.06e-01 | 76.4% | 35.4% |
| 2wfgA00 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.54 | 43.0 | 2.99e-01 | 100.0% | 45.6% |
| 3ujzA03 | 2.60.20.40 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.53 | 44.0 | 3.75e-01 | 100.0% | 70.0% |
| 3dadA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 42.0 | 2.75e-01 | 100.0% | 20.7% |
| 2pk0A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 43.0 | 2.91e-01 | 100.0% | 34.8% |
| 1s4dE02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.52 | 37.0 | 2.94e-01 | 90.9% | 32.4% |
| 1wkyA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 43.0 | 3.31e-01 | 100.0% | 46.5% |
| 2hn1A01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.52 | 44.0 | 3.31e-01 | 98.2% | 76.8% |
| 1k8rB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 45.0 | 3.97e-01 | 100.0% | 75.6% |
| 3ir9A02 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.51 | 40.0 | 3.22e-01 | 90.9% | 42.5% |
| 3f8uB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 3.39e-01 | 100.0% | 65.1% |
| 3mdnD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 41.0 | 2.88e-01 | 100.0% | 41.7% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 37.0 | 2.50e-01 | 89.1% | 58.7% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3496147 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.75 | 59.0 | 4.92e-01 | 89.1% | 72.0% |
| 4997210 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.69 | 59.0 | 5.10e-01 | 100.0% | 97.8% |
| 4231372 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.68 | 55.0 | 5.09e-01 | 89.1% | 97.1% |
| 3278973 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.68 | 46.0 | 5.12e-01 | 83.6% | 97.5% |
| 3389022 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.68 | 48.0 | 5.01e-01 | 90.9% | 84.0% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.68 | 54.0 | 4.94e-01 | 89.1% | 94.7% |
| 4147528 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.67 | 54.0 | 5.02e-01 | 89.1% | 98.6% |
| 4995774 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.66 | 45.0 | 5.01e-01 | 83.6% | 97.5% |
| 3230674 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 49.0 | 5.27e-01 | 87.3% | 97.8% |
| 3959440 | 4.1.1.180 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3107 | 0.65 | 54.0 | 5.12e-01 | 90.9% | 98.5% |
| 3467170 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.65 | 50.0 | 4.90e-01 | 89.1% | 81.0% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.65 | 53.0 | 4.61e-01 | 94.5% | 87.8% |
| 3987692 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.65 | 54.0 | 5.01e-01 | 100.0% | 74.3% |
| 5054307 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 47.0 | 5.12e-01 | 89.1% | 97.8% |
| 4943252 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.63 | 53.0 | 3.89e-01 | 92.7% | 38.6% |
| 4928795 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 46.0 | 4.92e-01 | 85.5% | 97.8% |
| 3282305 | 4187.1.1.0 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like | 0.63 | 53.0 | 4.98e-01 | 100.0% | 75.7% |
| 3590261 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.63 | 52.0 | 4.94e-01 | 98.2% | 91.2% |
| 3504586 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.63 | 51.0 | 3.67e-01 | 89.1% | 31.6% |
| 5027350 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.63 | 47.0 | 3.61e-01 | 87.3% | 33.3% |
| 5052150 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 50.0 | 5.05e-01 | 96.4% | 89.1% |
| 4929218 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 47.0 | 5.05e-01 | 87.3% | 100.0% |
| 4151900 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.62 | 49.0 | 3.67e-01 | 89.1% | 36.8% |
| 5016960 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 45.0 | 4.84e-01 | 96.4% | 97.8% |
| 4956457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 46.0 | 4.76e-01 | 90.9% | 90.0% |
| 4962623 | 375.1.1.339 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7560 | 0.61 | 45.0 | 4.79e-01 | 87.3% | 97.8% |
| 3483429 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 53.0 | 3.98e-01 | 100.0% | 67.1% |
| 3602943 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 43.0 | 4.49e-01 | 94.5% | 86.0% |
| 4979507 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.60 | 48.0 | 3.56e-01 | 90.9% | 38.3% |
| 3738005 | 3868.1.1.1 ↗ | a+b three layers › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mhr1 | 0.60 | 52.0 | 3.79e-01 | 100.0% | 99.4% |
| 3397134 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.60 | 43.0 | 4.47e-01 | 92.7% | 88.0% |
| 5019693 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.59 | 48.0 | 4.98e-01 | 90.9% | 100.0% |
| 5026915 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 45.0 | 4.73e-01 | 98.2% | 94.0% |
| 5034902 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.59 | 49.0 | 3.61e-01 | 92.7% | 36.6% |
| 4982792 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.58 | 47.0 | 3.41e-01 | 90.9% | 31.2% |
| 3360654 | 376.1.3.57 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_ULT1 | 0.58 | 38.0 | 3.82e-01 | 76.4% | 65.5% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.58 | 43.0 | 4.69e-01 | 89.1% | 100.0% |
| 4197700 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.58 | 47.0 | 3.11e-01 | 100.0% | 79.3% |
| 5032187 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 44.0 | 4.47e-01 | 85.5% | 94.5% |
| 3440815 | 5.1.11.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like | 0.57 | 45.0 | 2.81e-01 | 89.1% | 95.9% |
| 4031372 | 862.1.1.12 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 | 0.57 | 46.0 | 3.28e-01 | 98.2% | 41.0% |
| 3816922 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.57 | 48.0 | 3.10e-01 | 100.0% | 48.2% |
| 4990489 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 44.0 | 4.57e-01 | 89.1% | 98.0% |
| 3208632 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 46.0 | 4.60e-01 | 96.4% | 92.7% |
| 5053437 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 44.0 | 3.16e-01 | 100.0% | 57.1% |
| 224066 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.55 | 45.0 | 4.16e-01 | 100.0% | 71.4% |
| 3604593 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 43.0 | 4.35e-01 | 94.5% | 90.9% |
| 4024835 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 40.0 | 3.21e-01 | 85.5% | 42.3% |
| 3859590 | 386.1.1.248 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 | 0.54 | 40.0 | 4.12e-01 | 89.1% | 90.0% |
| 4028716 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.54 | 47.0 | 3.54e-01 | 100.0% | 61.5% |
| 3347090 | 221.1.1.159 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7138 | 0.53 | 43.0 | 3.76e-01 | 90.9% | 68.2% |
| 3618241 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 44.0 | 3.64e-01 | 96.4% | 97.1% |
| 3793671 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.53 | 42.0 | 3.82e-01 | 98.2% | 92.9% |
| 5074679 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.52 | 41.0 | 3.22e-01 | 90.9% | 64.6% |
| 3974708 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 3.44e-01 | 100.0% | 62.4% |
D4
high
residues 449-510
D5
medium
residues 511-571