←Back to structures

MN094788.1__QDH83535.1__X__00145

Bact-Vir

MN094788.1__QDH83535.1__X__00145

Identity

Accession:
MN094788 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Moturavirus› Achromobacter_phage_Motura

TaxID: 2591403

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-90
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.86 80.0 6.46e-01 100.0% 63.4%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.76 67.0 6.11e-01 100.0% 100.0%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.76 66.0 5.93e-01 100.0% 98.6%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 37.0 3.48e-01 100.0% 56.1%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.52 41.0 3.88e-01 98.1% 73.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2640772 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.86 80.0 6.29e-01 100.0% 59.0%
2559744 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.85 76.0 7.29e-01 100.0% 86.4%
3602933 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.83 76.0 7.04e-01 100.0% 92.3%
5022524 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.78 70.0 6.39e-01 100.0% 75.7%
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.77 68.0 6.58e-01 100.0% 96.6%
5083817 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.76 66.0 6.23e-01 98.1% 98.5%
4933166 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.76 68.0 5.92e-01 100.0% 93.8%
5025023 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.76 67.0 6.00e-01 100.0% 92.0%
3981037 70.4.1.9 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.76 67.0 6.70e-01 100.0% 98.2%
1176867 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.76 66.0 5.56e-01 100.0% 80.2%
3516152 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.76 67.0 5.73e-01 100.0% 91.8%
4602455 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.76 66.0 5.99e-01 100.0% 95.9%
3970970 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.76 66.0 5.94e-01 100.0% 92.0%
3227803 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.75 66.0 6.23e-01 100.0% 100.0%
3944705 2.1.1.19 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.59 44.0 3.99e-01 100.0% 58.7%
D2 high residues 127-203
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.02e-01 84.4% 88.1%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.59 46.0 4.11e-01 81.8% 81.7%
1y42X01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 46.0 3.28e-01 94.8% 38.2%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.56 44.0 4.21e-01 98.7% 73.6%
4gewA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 31.0 3.17e-01 93.5% 53.2%
3tqgB01 1.10.580.10 Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 0.54 39.0 2.81e-01 77.9% 49.8%
4o7iA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.53 42.0 3.38e-01 94.8% 45.1%
2yhwA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 38.0 3.08e-01 83.1% 37.8%
2dgzA01 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.52 40.0 3.83e-01 84.4% 100.0%
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.51 37.0 2.95e-01 76.6% 59.4%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 42.0 4.26e-01 98.7% 92.3%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.51 40.0 3.93e-01 92.2% 82.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3373441 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 60.0 4.26e-01 94.8% 37.5%
4166913 1156.1.1.1 ↗ alpha complex topology › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124_C 0.64 51.0 4.17e-01 87.0% 53.8%
3413518 592.1.1.7 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 0.61 47.0 4.80e-01 84.4% 100.0%
3414171 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.61 49.0 3.88e-01 94.8% 50.6%
3587994 3962.1.1.0 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.60 45.0 4.69e-01 81.8% 94.3%
3267527 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.58 34.0 3.46e-01 87.0% 60.0%
3434189 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 42.0 4.63e-01 77.9% 96.9%
5079736 102.3.1.1 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.57 39.0 4.02e-01 83.1% 74.7%
4270095 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.55 38.0 3.97e-01 90.9% 77.1%
3597512 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 41.0 4.23e-01 83.1% 89.3%
3839989 7022.1.1.1 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.54 38.0 2.97e-01 74.0% 66.9%
3716875 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.51 42.0 3.87e-01 92.2% 76.2%