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MN094788.1__QDH83662.1__X__00310
Bact-VirMN094788.1__QDH83662.1__X__00310
Identity
- Accession:
- MN094788 ↗
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Taxonomy
TaxID: 2591403
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-61
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23986.2 best | Pam3_gp59 | 83.7 | 1.30e-23 | 100.0% | 82.9% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mogA03 | 3.30.750.190 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.62 | 52.0 | 4.50e-01 | 100.0% | 85.1% |
| 4cclA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.61 | 48.0 | 3.44e-01 | 85.7% | 29.8% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.61 | 44.0 | 3.81e-01 | 78.6% | 98.9% |
| 3mpoA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.59 | 42.0 | 3.50e-01 | 76.8% | 96.3% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 39.0 | 2.84e-01 | 87.5% | 23.9% |
| 2do7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 3.90e-01 | 80.4% | 81.2% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 46.0 | 3.13e-01 | 91.1% | 30.8% |
| 5cs2A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.58 | 49.0 | 3.72e-01 | 100.0% | 77.6% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.56 | 41.0 | 2.96e-01 | 82.1% | 90.1% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.56 | 35.0 | 3.34e-01 | 73.2% | 53.7% |
| 3sigA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.56 | 42.0 | 2.76e-01 | 82.1% | 61.1% |
| 1y9lA00 | 2.40.128.230 | Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM | 0.56 | 45.0 | 3.71e-01 | 92.9% | 67.3% |
| 1m5q102 | 3.30.310.60 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Like-Sm ribonucleoprotein, C-terminal domain | 0.56 | 41.0 | 4.09e-01 | 80.4% | 87.9% |
| 3bl4A01 | 3.40.1680.10 | Alpha Beta › 3-Layer(aba) Sandwich › yp_829618.1 fold › yp_829618.1 domain like | 0.56 | 42.0 | 3.96e-01 | 85.7% | 70.8% |
| 4id8A00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.91e-01 | 83.9% | 73.8% |
| 7ce1A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 36.0 | 3.77e-01 | 83.9% | 75.0% |
| 6tqfA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 41.0 | 2.78e-01 | 82.1% | 36.0% |
| 6r8gB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.55 | 39.0 | 2.90e-01 | 80.4% | 74.7% |
| 1vjwA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.81e-01 | 83.9% | 74.6% |
| 7vyjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 44.0 | 3.09e-01 | 96.4% | 51.1% |
| 4f7oA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 43.0 | 2.87e-01 | 92.9% | 33.6% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.52 | 44.0 | 3.20e-01 | 94.6% | 56.9% |
| 4cgyA04 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.52 | 42.0 | 3.44e-01 | 100.0% | 84.0% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.52 | 39.0 | 3.35e-01 | 83.9% | 70.8% |
| 7xb6B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 40.0 | 3.03e-01 | 98.2% | 44.3% |
| 1iqzA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.48e-01 | 85.7% | 69.1% |
| 2d5wA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 42.0 | 2.84e-01 | 98.2% | 42.3% |
| 4oycB00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.51 | 37.0 | 3.34e-01 | 83.9% | 76.4% |
| 1rkqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.51 | 38.0 | 3.24e-01 | 87.5% | 98.1% |
| 1j3wC00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.50 | 37.0 | 2.97e-01 | 83.9% | 94.0% |
| 1ti6B02 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 3.73e-01 | 83.9% | 94.7% |
| 2a3nA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.50 | 42.0 | 3.12e-01 | 98.2% | 86.3% |
| 3kh1A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 41.0 | 2.91e-01 | 94.6% | 32.3% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4393385 | 1032.1.1.1 ↗ | alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › TcdA_TcdB_pore | 0.68 | 59.0 | 4.17e-01 | 100.0% | 92.8% |
| 3692551 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.63 | 52.0 | 3.04e-01 | 92.9% | 65.3% |
| 5055185 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.63 | 44.0 | 4.34e-01 | 73.2% | 76.7% |
| 3978511 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.62 | 50.0 | 4.10e-01 | 91.1% | 72.4% |
| 3944440 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.61 | 50.0 | 4.14e-01 | 91.1% | 76.0% |
| 3732285 | 101.1.22.0 ↗ | alpha arrays › HTH › HTH › double HTH | 0.61 | 52.0 | 3.72e-01 | 98.2% | 80.0% |
| 4534744 | 6051.5.1.2 ↗ | alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › PF27494 | 0.61 | 47.0 | 4.50e-01 | 91.1% | 90.0% |
| 1401567 | 109.4.1.145 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Paf67 | 0.61 | 47.0 | 3.45e-01 | 92.9% | 34.6% |
| 3451427 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.61 | 44.0 | 4.00e-01 | 80.4% | 57.5% |
| 5036382 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.60 | 45.0 | 4.33e-01 | 83.9% | 87.7% |
| 2322641 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.60 | 42.0 | 3.67e-01 | 78.6% | 48.8% |
| 3993128 | 109.26.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | 0.60 | 44.0 | 2.53e-01 | 80.4% | 11.4% |
| 4288608 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 49.0 | 3.08e-01 | 100.0% | 18.4% |
| 4058198 | 101.1.2.170 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_51 | 0.59 | 49.0 | 3.81e-01 | 100.0% | 50.0% |
| 4951364 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 40.0 | 3.98e-01 | 73.2% | 76.3% |
| 3978721 | 3261.1.1.5 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › Yop-YscD_ppl_2nd | 0.58 | 43.0 | 4.24e-01 | 83.9% | 88.3% |
| 5068803 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.57 | 40.0 | 4.02e-01 | 83.9% | 73.3% |
| 3973075 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.56 | 47.0 | 3.93e-01 | 96.4% | 76.2% |
| 4159102 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.56 | 41.0 | 3.94e-01 | 85.7% | 65.7% |
| 5000950 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.56 | 46.0 | 3.62e-01 | 98.2% | 74.8% |
| None | — | 0.56 | 42.0 | 4.06e-01 | 85.7% | 71.2% | |
| 4433457 | 205.1.1.20 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_15 | 0.56 | 42.0 | 4.06e-01 | 83.9% | 73.8% |
| None | — | 0.56 | 42.0 | 4.11e-01 | 83.9% | 76.2% | |
| 143003 | 205.1.1.19 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 | 0.56 | 43.0 | 4.11e-01 | 85.7% | 72.7% |
| 4974520 | 205.1.1.19 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 | 0.56 | 40.0 | 3.90e-01 | 83.9% | 71.4% |
| 3767717 | 207.1.1.38 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LIP1 | 0.56 | 45.0 | 2.81e-01 | 96.4% | 26.8% |
| 3277286 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.55 | 38.0 | 3.64e-01 | 75.0% | 62.9% |
| 3499387 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.55 | 45.0 | 3.77e-01 | 100.0% | 63.6% |
| None | — | 0.55 | 38.0 | 3.81e-01 | 83.9% | 73.3% | |
| 3718849 | 604.1.1.51 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DHC_N1 | 0.53 | 44.0 | 3.15e-01 | 100.0% | 62.1% |
| 3933051 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.53 | 41.0 | 2.68e-01 | 89.3% | 23.0% |
| 5067176 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.53 | 44.0 | 3.08e-01 | 98.2% | 68.1% |
| 4042477 | 4354.1.1.1 ↗ | a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF | 0.52 | 43.0 | 3.26e-01 | 94.6% | 43.3% |
| 3276388 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 36.0 | 2.17e-01 | 73.2% | 16.3% |
| 5008379 | 304.37.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr | 0.52 | 36.0 | 3.44e-01 | 75.0% | 64.3% |
| 5002652 | 205.1.1.19 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 | 0.52 | 38.0 | 3.63e-01 | 83.9% | 70.0% |
| 4284745 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.52 | 37.0 | 3.11e-01 | 83.9% | 44.2% |
| 4977732 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.51 | 38.0 | 2.65e-01 | 85.7% | 21.3% |
| 4045455 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 40.0 | 3.65e-01 | 94.6% | 63.5% |
| 3280292 | 205.1.1.19 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 | 0.51 | 38.0 | 3.68e-01 | 85.7% | 78.5% |
| 3737809 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 35.0 | 3.28e-01 | 80.4% | 58.8% |
| 3193048 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.50 | 36.0 | 3.00e-01 | 76.8% | 84.0% |