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MN095770.1__QFR57587.1__CPT_Slocum_007__00007

Bact-Vir

MN095770.1__QFR57587.1__CPT_Slocum_007__00007

Identity

Accession:
MN095770 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Serratia_phage_Slocum

TaxID: 2601679

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-60
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26822.1 best Phage_T5_A2 43.8 4.30e-11 100.0% 37.0%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ignB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.83 69.0 5.60e-01 100.0% 50.0%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 65.0 6.35e-01 100.0% 81.5%
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 61.0 6.26e-01 100.0% 91.5%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 5.84e-01 100.0% 69.7%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 60.0 5.94e-01 98.0% 79.6%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 62.0 6.35e-01 100.0% 97.9%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 59.0 5.65e-01 100.0% 78.3%
5u1xA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.71 49.0 5.11e-01 74.0% 87.0%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 54.0 5.54e-01 96.0% 93.6%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 61.0 5.45e-01 100.0% 80.3%
1ug2A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 53.0 5.28e-01 100.0% 86.5%
2raeA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 52.0 5.46e-01 94.0% 100.0%
1cf7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.95e-01 100.0% 70.1%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.45e-01 100.0% 53.7%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.66 55.0 4.35e-01 100.0% 44.5%
3c2bA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 56.0 5.62e-01 100.0% 100.0%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.94e-01 100.0% 71.0%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 46.0 4.19e-01 76.0% 64.7%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.63 52.0 3.83e-01 98.0% 94.1%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.63 42.0 3.90e-01 72.0% 67.2%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 53.0 3.57e-01 100.0% 43.8%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.62 42.0 4.15e-01 74.0% 64.9%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 48.0 4.61e-01 100.0% 77.0%
2vxgA01 6.10.140.270 Special › Helix non-globular › Helix Hairpins › 0.61 43.0 4.45e-01 98.0% 82.6%
1zk8A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 47.0 4.86e-01 86.0% 95.7%
4q5qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 47.0 3.76e-01 98.0% 62.9%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.53 36.0 3.05e-01 74.0% 57.1%
1lw7A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.14e-01 100.0% 80.4%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.52 40.0 3.72e-01 92.0% 65.2%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 36.0 3.63e-01 80.0% 74.1%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3449297 101.1.1.298 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7645 0.82 68.0 6.44e-01 100.0% 76.7%
3259221 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.82 70.0 6.64e-01 100.0% 80.0%
2464 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.81 65.0 5.74e-01 100.0% 61.1%
3641099 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 73.0 6.85e-01 100.0% 83.3%
3891868 5086.1.1.21 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › CARMIL_C 0.80 56.0 3.66e-01 74.0% 18.5%
3647007 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.80 71.0 6.68e-01 100.0% 83.3%
3214674 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 64.0 6.29e-01 100.0% 87.3%
4027285 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.76 61.0 5.21e-01 100.0% 54.1%
5080838 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.75 56.0 5.41e-01 100.0% 71.7%
4390290 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.75 60.0 5.61e-01 100.0% 72.3%
3218375 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 64.0 6.22e-01 100.0% 92.7%
4968085 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 55.0 5.10e-01 98.0% 64.6%
3250569 101.1.2.151 ↗ alpha arrays › HTH › HTH › winged helix domain › COR 0.73 63.0 5.57e-01 100.0% 70.7%
3454624 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.73 49.0 4.76e-01 100.0% 63.6%
3436605 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 57.0 5.48e-01 92.0% 95.0%
3555844 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.71 55.0 5.03e-01 100.0% 64.3%
4058345 3749.5.1.0 ↗ extended segments › 26S proteasome regulatory subunits C-terminal helices › 26S proteasome regulatory subunit RPN3 C-terminal helix › 26S proteasome regulatory subunit RPN3 C-terminal helix 0.70 55.0 4.36e-01 100.0% 40.9%
5031250 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.70 56.0 4.72e-01 100.0% 51.1%
3181120 101.1.1.20 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.70 59.0 4.82e-01 100.0% 90.0%
3444553 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.68 47.0 4.60e-01 74.0% 67.3%
4998352 304.1.1.0 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.67 53.0 4.05e-01 92.0% 49.6%
1148184 283.2.1.2 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.67 56.0 4.48e-01 100.0% 78.7%
3782446 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.66 54.0 4.70e-01 100.0% 57.6%
3285884 103.1.1.127 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RelA_AH_RIS 0.66 48.0 4.25e-01 80.0% 57.3%
None — 0.66 55.0 4.84e-01 100.0% 76.2%
3396463 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.63 51.0 4.24e-01 100.0% 65.0%
4018920 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 3.44e-01 98.0% 49.3%
4349815 601.7.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.61 50.0 3.58e-01 100.0% 31.8%
4032823 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 46.0 4.01e-01 96.0% 80.0%
3737310 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.54 43.0 3.97e-01 96.0% 74.3%
5050711 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.53 43.0 3.19e-01 98.0% 49.3%
3719495 4004.1.1.5 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc 0.53 42.0 2.95e-01 100.0% 72.5%
D2 high residues 79-130
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26822.1 best Phage_T5_A2 44.4 2.80e-11 100.0% 37.0%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.75 57.0 5.32e-01 84.6% 76.5%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 60.0 5.46e-01 100.0% 95.7%
2nyvA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 55.0 5.25e-01 100.0% 93.8%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 38.0 3.74e-01 98.1% 52.6%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.64 47.0 3.95e-01 80.8% 89.4%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.56 46.0 3.96e-01 98.1% 84.6%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 46.0 4.19e-01 96.2% 100.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.54 44.0 3.97e-01 100.0% 98.7%
2r2iA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 45.0 3.89e-01 100.0% 88.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4076621 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.70 40.0 4.16e-01 98.1% 60.0%
4133911 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 59.0 3.92e-01 100.0% 31.0%
3589846 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 60.0 3.93e-01 100.0% 28.6%
4550123 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.65 37.0 3.59e-01 96.2% 48.3%
5062039 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.61 34.0 3.49e-01 88.5% 58.0%
3515630 4953.1.1.34 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › HAD_2 0.60 49.0 4.05e-01 100.0% 62.0%
3587875 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.57 46.0 3.20e-01 100.0% 33.0%
3338097 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 40.0 4.02e-01 86.5% 83.6%
3424045 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 41.0 4.05e-01 86.5% 83.6%