←Back to structures

MN095770.1__QFR57594.1__CPT_Slocum_014__00014

Bact-Vir

MN095770.1__QFR57594.1__CPT_Slocum_014__00014

Identity

Accession:
MN095770 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Serratia_phage_Slocum

TaxID: 2601679

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-106
PDB
Domain cluster: rep: MZ501108.1__QXV85225.1__bas27_0186__00155__D6-89
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dohB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 40.0 4.05e-01 100.0% 58.0%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 44.0 4.25e-01 100.0% 60.4%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.65 41.0 3.73e-01 100.0% 47.4%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 38.0 4.21e-01 98.9% 80.6%
2ii7H00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.61 41.0 3.87e-01 100.0% 57.5%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.60 38.0 4.01e-01 96.6% 72.7%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 39.0 4.14e-01 97.7% 77.6%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 42.0 3.96e-01 100.0% 60.6%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 35.0 4.00e-01 96.6% 80.0%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 37.0 3.44e-01 95.5% 48.7%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 3.43e-01 100.0% 42.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 36.0 3.84e-01 95.5% 75.0%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 33.0 3.02e-01 100.0% 43.2%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.55 38.0 3.28e-01 100.0% 43.8%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.75e-01 100.0% 62.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 33.0 2.77e-01 95.5% 30.5%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 40.0 3.73e-01 100.0% 61.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 33.0 3.30e-01 95.5% 55.4%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 4.22e-01 100.0% 70.2%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 39.0 3.82e-01 100.0% 69.4%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 38.0 3.03e-01 98.9% 36.3%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.54 45.0 3.63e-01 100.0% 47.7%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 4.50e-01 100.0% 86.3%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.53 39.0 4.00e-01 100.0% 81.0%
1wktA00 2.60.20.20 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.52 31.0 3.17e-01 100.0% 56.8%
1pfoA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.52 43.0 3.49e-01 100.0% 45.4%
2ww8A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.25e-01 100.0% 52.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 31.0 3.08e-01 95.5% 55.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4082072 12.1.1.22 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C 0.67 37.0 3.66e-01 100.0% 49.5%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.64 42.0 4.71e-01 97.7% 92.2%
4996552 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 41.0 4.17e-01 96.6% 68.2%
5074648 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 41.0 4.32e-01 96.6% 77.3%
5012230 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 4.01e-01 100.0% 63.2%
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 39.0 4.17e-01 95.5% 76.0%
4983090 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 40.0 4.18e-01 96.6% 73.4%
3396683 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 35.0 3.73e-01 97.7% 63.3%
4160542 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 39.0 4.48e-01 95.5% 98.3%
4967222 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 38.0 4.35e-01 96.6% 93.3%
5030993 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 40.0 4.12e-01 97.7% 73.8%
5067865 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.60 39.0 4.19e-01 95.5% 81.4%
3345090 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 40.0 3.79e-01 98.9% 55.6%
4951473 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 39.0 4.35e-01 96.6% 92.1%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 38.0 4.30e-01 95.5% 96.6%
2106285 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 39.0 3.69e-01 97.7% 54.6%
2527501 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 39.0 3.73e-01 97.7% 56.7%
4374005 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 37.0 3.42e-01 100.0% 47.8%
5053865 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.59 38.0 3.83e-01 96.6% 64.4%
5000510 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 39.0 4.11e-01 96.6% 78.7%
4013514 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.59 39.0 3.70e-01 97.7% 56.2%
5013194 3115.4.1.0 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.58 36.0 4.35e-01 92.0% 100.0%
3617619 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 38.0 3.34e-01 100.0% 43.7%
4943401 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.58 40.0 4.07e-01 95.5% 74.1%
3517068 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.58 37.0 4.17e-01 94.3% 89.2%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.57 35.0 4.08e-01 95.5% 98.2%
4991099 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.57 34.0 3.42e-01 100.0% 57.8%
2831852 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 37.0 3.61e-01 97.7% 58.4%
3411558 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 46.0 4.02e-01 100.0% 58.6%
3727692 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 37.0 2.97e-01 100.0% 33.0%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.54 35.0 3.88e-01 96.6% 87.7%
3309702 207.1.1.43 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 0.52 40.0 2.47e-01 100.0% 13.5%
4944742 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.75e-01 100.0% 62.3%
3510040 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.51 38.0 4.00e-01 98.9% 90.0%
3905094 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.50 40.0 3.58e-01 100.0% 59.3%
D2 high residues 113-184
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gr0D01 3.30.70.1780 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 34.0 4.08e-01 79.2% 97.6%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.54 48.0 4.80e-01 100.0% 98.7%
2awnC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.80e-01 95.8% 25.5%
3k69A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.29e-01 100.0% 40.0%
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.52 37.0 4.04e-01 88.9% 89.8%
3eywB02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 40.0 3.03e-01 83.3% 78.4%
5y58A01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.51 37.0 2.63e-01 75.0% 93.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010736 101.1.16.0 ↗ alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain 0.68 53.0 5.55e-01 97.2% 93.8%
3282710 2492.1.1.35 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 0.61 45.0 3.41e-01 77.8% 60.6%
5071574 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 3.67e-01 100.0% 49.5%
5016235 327.13.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system 0.59 48.0 4.50e-01 88.9% 85.6%
5025049 327.7.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C 0.59 46.0 4.88e-01 88.9% 92.3%
None — 0.59 48.0 4.76e-01 90.3% 97.3%
4941259 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.55 43.0 3.50e-01 95.8% 44.4%
3701322 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.55 39.0 2.97e-01 98.6% 29.2%
5013855 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.55 45.0 4.05e-01 90.3% 85.0%
3208717 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.53 43.0 3.64e-01 87.5% 65.0%
5000380 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.53 41.0 4.06e-01 86.1% 98.7%
1878313 2004.1.1.231 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNase_J_b_CASP 0.53 41.0 3.10e-01 81.9% 62.7%
3669508 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.52 36.0 2.53e-01 72.2% 76.5%
3378278 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.51 45.0 2.84e-01 100.0% 25.1%
3929890 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.50 38.0 2.73e-01 100.0% 26.7%