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MN095770.1__QFR57704.1__CPT_Slocum_147__00124

Bact-Vir

MN095770.1__QFR57704.1__CPT_Slocum_147__00124

Identity

Accession:
MN095770 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-57
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 70.0 6.48e-01 100.0% 69.7%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.74 64.0 4.18e-01 100.0% 24.1%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 55.0 5.80e-01 100.0% 93.6%
5z7rA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.71 47.0 4.73e-01 76.9% 69.2%
1xwyA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.71 63.0 3.98e-01 100.0% 33.8%
6o9aA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.71 58.0 4.16e-01 92.3% 82.1%
4qfeK02 1.10.287.2460 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 45.0 5.09e-01 76.9% 100.0%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.70 47.0 4.81e-01 76.9% 73.5%
3ecsC01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.70 57.0 4.73e-01 96.2% 58.0%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.69 58.0 5.02e-01 100.0% 70.9%
4mo7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 60.0 4.35e-01 100.0% 50.7%
2j5iA02 6.10.250.2850 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 45.0 4.99e-01 76.9% 97.4%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 57.0 4.97e-01 98.1% 69.9%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.67 56.0 4.96e-01 98.1% 81.0%
3q9dB01 1.20.58.1050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 55.0 4.76e-01 98.1% 77.5%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.66 54.0 5.00e-01 96.2% 95.8%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.66 46.0 4.56e-01 75.0% 71.4%
3kg2A05 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 50.0 3.78e-01 82.7% 76.0%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 54.0 5.26e-01 92.3% 96.5%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.65 54.0 4.89e-01 100.0% 91.0%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.61 48.0 4.30e-01 96.2% 62.2%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 47.0 4.38e-01 92.3% 76.1%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 50.0 3.49e-01 98.1% 73.5%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 47.0 3.59e-01 100.0% 93.6%
3u4qB04 6.10.140.1030 Special › Helix non-globular › Helix Hairpins › 0.56 41.0 3.78e-01 98.1% 60.9%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 41.0 4.03e-01 96.2% 74.6%
3hklA00 1.10.2000.10 Mainly Alpha › Orthogonal Bundle › Frizzled cysteine-rich domain › Frizzled cysteine-rich domain 0.54 44.0 3.35e-01 96.2% 75.2%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 43.0 3.86e-01 92.3% 62.2%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 44.0 3.49e-01 98.1% 82.9%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.53 47.0 3.61e-01 100.0% 44.8%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 45.0 4.04e-01 98.1% 76.0%
1dk8A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.51 42.0 3.72e-01 100.0% 94.1%
3hinA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.51 37.0 3.66e-01 82.7% 80.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4056782 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.88 76.0 4.28e-01 100.0% 9.5%
3671563 3640.1.1.3 alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › EDR1 0.78 69.0 4.81e-01 100.0% 57.0%
4091757 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.77 63.0 3.63e-01 100.0% 9.8%
5023101 101.8.1.0 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases 0.77 68.0 4.76e-01 100.0% 31.5%
3397244 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.76 66.0 5.58e-01 100.0% 62.2%
4936739 3921.1.1.1 alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr 0.76 68.0 4.50e-01 100.0% 35.5%
3904078 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 53.0 4.80e-01 76.9% 54.8%
4992012 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 63.0 6.09e-01 100.0% 86.7%
3729975 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 54.0 4.90e-01 82.7% 56.9%
3939027 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.73 61.0 3.60e-01 100.0% 12.3%
3402082 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 63.0 5.14e-01 100.0% 53.0%
4032004 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.72 51.0 3.19e-01 76.9% 13.7%
3563871 603.1.1.121 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30821 0.72 62.0 4.85e-01 100.0% 93.0%
3408255 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.72 63.0 4.78e-01 100.0% 44.8%
4964648 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.72 62.0 4.02e-01 98.1% 23.4%
4966093 3352.1.1.2 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 0.69 53.0 3.07e-01 82.7% 73.9%
4118464 4030.1.1.1 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.69 57.0 5.70e-01 98.1% 92.7%
4997718 4969.1.1.0 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.68 56.0 4.20e-01 100.0% 94.5%
3946213 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 54.0 3.93e-01 90.4% 59.3%
5045586 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.61 50.0 3.67e-01 100.0% 89.7%
3825073 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.60 49.0 4.33e-01 94.2% 75.0%
3825828 185.1.1.0 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 0.59 47.0 4.07e-01 98.1% 84.2%
4024046 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.57 49.0 3.85e-01 100.0% 73.3%
4029404 5051.1.1.0 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like 0.55 43.0 2.67e-01 94.2% 61.0%
4344927 1128.1.1.2 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.54 42.0 3.80e-01 86.5% 62.9%
3498448 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.54 46.0 3.98e-01 96.2% 80.0%
3895658 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.53 40.0 3.20e-01 84.6% 40.0%
3750030 604.12.1.15 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Mito_morph_reg 0.53 45.0 3.79e-01 96.2% 73.3%
5009776 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.52 42.0 3.47e-01 96.2% 83.8%
3899960 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 44.0 3.61e-01 98.1% 75.0%
D2 high residues 85-130
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 61.0 5.75e-01 100.0% 90.9%
1cukA03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 55.0 5.49e-01 91.3% 87.5%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.66 47.0 3.45e-01 76.1% 39.5%
2mh3A00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.66 51.0 4.53e-01 100.0% 58.6%
3t4rA00 1.20.120.1590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 53.0 4.61e-01 95.7% 68.1%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.63 49.0 4.62e-01 97.8% 85.7%
1i24A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.61 46.0 3.31e-01 82.6% 69.7%
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 43.0 3.98e-01 89.1% 62.5%
1h1oA02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.57 49.0 4.08e-01 97.8% 75.0%
1h1oA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.57 47.0 3.99e-01 91.3% 61.3%
5xbfA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.56 41.0 3.34e-01 82.6% 52.5%
1w36B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 44.0 2.87e-01 97.8% 17.7%
1fcdC01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.56 44.0 3.76e-01 93.5% 52.6%
2b61A02 1.10.1740.110 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.51 35.0 2.94e-01 80.4% 44.2%
3ph0C00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 44.0 4.24e-01 100.0% 88.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4120714 605.8.1.0 alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like 0.74 60.0 6.12e-01 100.0% 93.3%
4207710 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.69 57.0 5.25e-01 91.3% 75.9%
3423523 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 59.0 4.74e-01 100.0% 82.2%
4003837 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.65 49.0 3.81e-01 82.6% 40.0%
3625595 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 49.0 4.70e-01 97.8% 74.5%
5058468 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.59 41.0 3.48e-01 73.9% 56.0%
3736385 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.59 42.0 2.66e-01 76.1% 46.5%
4147304 103.5.1.2 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.58 43.0 4.08e-01 89.1% 66.7%
4512912 107.1.1.1 alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C 0.58 46.0 3.82e-01 89.1% 52.9%
4032135 632.2.1.39 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF4355 0.56 45.0 3.95e-01 97.8% 56.2%
4484523 5067.1.1.10 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › PIG-F 0.56 43.0 3.00e-01 89.1% 80.9%
3737617 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 43.0 4.01e-01 100.0% 71.7%
3204604 6155.1.1.4 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.52 44.0 3.83e-01 100.0% 86.7%
3813837 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.50 36.0 3.02e-01 76.1% 72.0%